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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12434669	G-A	HOMO	INTERGENIC
SBS	Chr1	14691600	T-C	HET	INTRON
SBS	Chr1	32869017	C-A	HOMO	INTERGENIC
SBS	Chr1	6057246	A-T	HOMO	INTERGENIC
SBS	Chr10	18543187	T-G	HET	INTERGENIC
SBS	Chr10	5384461	G-A	HOMO	INTERGENIC
SBS	Chr11	23790768	T-A	HET	INTERGENIC
SBS	Chr11	23792555	G-C	HET	INTRON
SBS	Chr11	8846404	C-A	HOMO	INTERGENIC
SBS	Chr12	21909425	A-T	HET	INTERGENIC
SBS	Chr2	11367794	T-A	HET	INTERGENIC
SBS	Chr2	15217014	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	16222422	A-G	HET	INTERGENIC
SBS	Chr2	19929247	T-C	HOMO	INTERGENIC
SBS	Chr2	5584058	T-G	HET	INTERGENIC
SBS	Chr2	7618355	T-C	HET	INTERGENIC
SBS	Chr3	21161523	C-T	HET	INTERGENIC
SBS	Chr3	23234238	G-C	HET	INTERGENIC
SBS	Chr3	4016991	G-A	HET	INTERGENIC
SBS	Chr7	14527330	G-T	HET	INTERGENIC
SBS	Chr7	27413849	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	7377199	A-G	HOMO	INTRON
SBS	Chr8	24057783	C-A	HOMO	INTERGENIC
SBS	Chr9	14427476	T-G	HET	INTERGENIC
SBS	Chr9	21203902	C-T	HET	INTERGENIC
SBS	Chr9	2428361	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g04550

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	177132	177715	583	LOC_Os04g01230
Deletion	Chr12	6240379	6531897	291518	38
Deletion	Chr2	6572118	6572119	1	LOC_Os02g12570
Deletion	Chr2	9715109	9715126	17	LOC_Os02g17000
Deletion	Chr3	10063762	10063763	1
Deletion	Chr5	15258644	15258645	1	LOC_Os05g26220
Deletion	Chr9	16699844	16699845	1
Deletion	Chr1	17352171	17352185	14
Deletion	Chr10	18539764	18539770	6	LOC_Os10g34710
Deletion	Chr9	18735992	18736160	168
Deletion	Chr11	22183034	22183043	9
Deletion	Chr3	23235642	23235643	1	LOC_Os03g41840
Deletion	Chr6	26718306	26718307	1
Deletion	Chr6	27519305	27519362	57	LOC_Os06g45500
Deletion	Chr6	27863867	27863872	5
Deletion	Chr2	35253022	35253028	6	LOC_Os02g57530

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	43059641	43059641	1
Insertion	Chr2	24576638	24576640	3
Insertion	Chr2	33002064	33002067	4
Insertion	Chr3	17832414	17832420	7	LOC_Os03g31300

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	9424559	9781017	LOC_Os08g16030
Inversion	Chr9	16229250	16486229	2
Inversion	Chr2	18270463	18296641	LOC_Os02g30714
Inversion	Chr2	18270740	18296589	LOC_Os02g30714

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8507275	Chr9	16229297	LOC_Os09g26700
Translocation	Chr12	8761584	Chr8	27826381	LOC_Os08g44200
Translocation	Chr9	17076895	Chr8	27826361	LOC_Os08g44200
Translocation	Chr9	20883365	Chr4	17888266	LOC_Os04g29990
Translocation	Chr12	27165673	Chr4	30150693	LOC_Os12g43730

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr9	15778922	16479291	700369	89

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