Search Results

Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3772026	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g07840
SBS	Chr1	4255063	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr1	5089683	G-T	HOMO	INTERGENIC
SBS	Chr1	13985196	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g24830
SBS	Chr1	38478391	A-T	HET	INTRON
SBS	Chr2	12461393	C-T	HET	INTERGENIC
SBS	Chr2	12461394	T-C	HET	INTERGENIC
SBS	Chr2	28382762	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g46540
SBS	Chr3	24374368	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g43610
SBS	Chr3	32899611	T-A	HET	INTERGENIC
SBS	Chr4	9284015	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16950
SBS	Chr4	12212612	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g21590
SBS	Chr4	14629365	T-A	HOMO	INTERGENIC
SBS	Chr4	15088155	C-T	HET	INTRON
SBS	Chr4	17468197	C-T	HET	INTERGENIC
SBS	Chr4	19204306	T-C	HET	INTERGENIC
SBS	Chr5	8539923	C-A	HET	INTERGENIC
SBS	Chr5	8664270	C-T	HOMO	INTERGENIC
SBS	Chr5	12096744	G-T	HET	INTRON
SBS	Chr5	14171272	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	5482268	G-A	HET	INTERGENIC
SBS	Chr6	15158840	C-A	HET	INTERGENIC
SBS	Chr7	3245957	G-T	HOMO	INTRON
SBS	Chr7	14001740	A-G	HET	INTERGENIC
SBS	Chr8	11425651	C-T	HET	INTERGENIC
SBS	Chr8	18596181	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30250
SBS	Chr8	18596182	T-C	HET	SYNONYMOUS_CODING
SBS	Chr9	15008630	A-T	HET	INTERGENIC
SBS	Chr10	1548295	G-T	HOMO	INTERGENIC
SBS	Chr10	1548297	G-T	HOMO	INTERGENIC
SBS	Chr10	15468601	C-G	HOMO	INTERGENIC
SBS	Chr11	8501259	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g15100
SBS	Chr11	8949681	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	22687044	A-C	HET	INTERGENIC
SBS	Chr12	4412438	C-T	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	164311	164325	14
Deletion	Chr10	1626001	2746000	1120000	160
Deletion	Chr8	2963971	2963974	3
Deletion	Chr9	4349164	4349165	1
Deletion	Chr3	6762215	6762217	2
Deletion	Chr11	7572396	7572402	6
Deletion	Chr11	7918873	7918888	15
Deletion	Chr9	8263827	8263829	2
Deletion	Chr9	8332705	8333009	304
Deletion	Chr3	9398895	9398902	7
Deletion	Chr10	9787506	9787516	10
Deletion	Chr2	12079171	12079172	1
Deletion	Chr9	15007250	15007262	12
Deletion	Chr4	15291163	15291164	1
Deletion	Chr11	16063217	16063223	6	LOC_Os11g27910
Deletion	Chr1	17243363	17243368	5
Deletion	Chr8	18896511	18896512	1
Deletion	Chr2	22523773	22523782	9
Deletion	Chr3	23716298	23716301	3
Deletion	Chr8	25313557	25313585	28	LOC_Os08g39950
Deletion	Chr6	27150999	27151003	4
Deletion	Chr6	27715316	27715331	15	LOC_Os06g45800
Deletion	Chr3	29079299	29079300	1	LOC_Os03g50900

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	1472195	1472195	1
Insertion	Chr9	15024747	15024764	18
Insertion	Chr3	32775225	32775227	3
Insertion	Chr7	3753282	3753282	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1589029	2746392	2
Inversion	Chr11	20865402	28679726

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2078914	Chr7	29149114	LOC_Os10g04400
Translocation	Chr7	14001838	Chr1	28244591	LOC_Os01g49150
Translocation	Chr9	20287708	Chr6	22062273

Main menu