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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14743981	C-T	HET	INTRON
SBS	Chr1	26681075	G-T	HET	INTERGENIC
SBS	Chr1	31723502	G-A	HET	INTERGENIC
SBS	Chr1	37603933	G-A	HET	INTERGENIC
SBS	Chr1	42041148	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g72500
SBS	Chr10	1367946	A-G	HET	INTRON
SBS	Chr10	20074557	A-T	HOMO	INTERGENIC
SBS	Chr11	23534665	A-G	HET	INTERGENIC
SBS	Chr11	23605617	C-T	HOMO	INTERGENIC
SBS	Chr11	2496699	A-T	HOMO	INTERGENIC
SBS	Chr12	22818368	A-T	HOMO	INTRON
SBS	Chr2	13091067	G-A	HOMO	INTERGENIC
SBS	Chr2	25656619	A-T	HOMO	INTRON
SBS	Chr2	4021158	C-T	HET	INTERGENIC
SBS	Chr3	10338869	T-G	HET	INTERGENIC
SBS	Chr3	13559330	C-T	HET	INTERGENIC
SBS	Chr3	15409234	C-T	HET	INTERGENIC
SBS	Chr3	32029337	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g56220
SBS	Chr3	32029338	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g56220
SBS	Chr4	10578278	G-T	HET	INTERGENIC
SBS	Chr4	14222646	C-G	HET	INTERGENIC
SBS	Chr4	16516607	A-G	HET	INTERGENIC
SBS	Chr4	16831416	C-A	HET	INTERGENIC
SBS	Chr4	18035782	C-A	HET	INTERGENIC
SBS	Chr4	3002231	G-C	HET	INTRON
SBS	Chr5	9199546	A-G	HET	INTERGENIC
SBS	Chr6	153959	C-T	HET	INTRON
SBS	Chr6	9569391	T-A	HET	INTERGENIC
SBS	Chr7	7958696	T-C	HET	INTERGENIC
SBS	Chr8	23747808	C-T	HET	INTERGENIC
SBS	Chr9	1068463	C-T	HET	INTERGENIC
SBS	Chr9	5505784	C-T	HET	INTERGENIC
SBS	Chr9	8777729	G-A	HET	INTERGENIC
SBS	Chr9	8777730	G-A	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1358751	1358752	1
Deletion	Chr9	3604974	3604978	4	LOC_Os09g07300
Deletion	Chr9	4065056	4065069	13
Deletion	Chr4	4941404	4941409	5
Deletion	Chr4	5165226	5165239	13
Deletion	Chr6	6036568	6036575	7
Deletion	Chr6	8478641	8478648	7
Deletion	Chr12	8683426	8683427	1
Deletion	Chr3	10304461	10304480	19
Deletion	Chr6	13545439	13545444	5
Deletion	Chr4	14030248	14030255	7
Deletion	Chr5	15075429	15075594	165
Deletion	Chr5	16056907	16056918	11
Deletion	Chr11	17034183	17041154	6971	2
Deletion	Chr5	17398359	17398361	2	LOC_Os05g30070
Deletion	Chr6	18191975	18191976	1
Deletion	Chr11	22914457	22914458	1
Deletion	Chr6	27816494	27816504	10
Deletion	Chr3	35780044	35780056	12	LOC_Os03g63310

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	16607553	16607554	2
Insertion	Chr3	11330959	11330959	1
Insertion	Chr5	27718859	27718866	8

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	18358525	18866713
Inversion	Chr1	19642303	20792190

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2171943	Chr7	24487594
Translocation	Chr9	2876578	Chr2	18211942	LOC_Os09g06140
Translocation	Chr9	3593203	Chr2	18212498	LOC_Os09g07300
Translocation	Chr9	3593327	Chr2	18213776	LOC_Os09g07300
Translocation	Chr12	13258601	Chr3	20028228	LOC_Os12g23440
Translocation	Chr6	13456096	Chr2	16375780	2
Translocation	Chr11	17034184	Chr7	4122906	2
Translocation	Chr11	17041138	Chr7	4122901	2
Translocation	Chr3	25354096	Chr1	27882664

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