Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18946258	C-T	HET	INTERGENIC
SBS	Chr1	2936876	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g06160
SBS	Chr1	33698288	G-A	HET	INTERGENIC
SBS	Chr1	43140227	A-G	HET	INTERGENIC
SBS	Chr10	7461442	G-A	HET	INTERGENIC
SBS	Chr11	10644756	T-G	HOMO	INTERGENIC
SBS	Chr12	21039609	T-C	HET	INTERGENIC
SBS	Chr12	4034589	A-T	HET	INTRON
SBS	Chr12	7953887	G-A	HET	INTRON
SBS	Chr3	18790775	C-A	HET	INTERGENIC
SBS	Chr3	20903616	G-A	HET	INTERGENIC
SBS	Chr3	20974203	G-A	HET	INTERGENIC
SBS	Chr3	21858354	T-G	HET	INTERGENIC
SBS	Chr3	27098713	A-T	HET	INTERGENIC
SBS	Chr4	2361885	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	27919304	G-A	HET	INTRON
SBS	Chr4	5633547	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g10390
SBS	Chr4	6097444	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	7279312	G-A	HET	INTRON
SBS	Chr5	13694118	T-C	HOMO	INTERGENIC
SBS	Chr6	14277960	T-A	HOMO	INTERGENIC
SBS	Chr6	26697173	T-C	HOMO	INTERGENIC
SBS	Chr6	29862591	C-T	HOMO	INTERGENIC
SBS	Chr7	14111104	C-T	HET	INTERGENIC
SBS	Chr7	15515923	C-T	HET	INTERGENIC
SBS	Chr7	18355494	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30990
SBS	Chr7	7653099	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	10987343	A-T	HOMO	INTERGENIC
SBS	Chr8	12036322	G-T	HOMO	INTRON
SBS	Chr8	309671	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g01510
SBS	Chr8	3831272	A-T	HET	INTERGENIC
SBS	Chr9	21448658	G-T	HET	INTERGENIC
SBS	Chr9	5256431	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09710
SBS	Chr9	9271266	C-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1966409	1966418	9
Deletion	Chr10	3627155	3627158	3
Deletion	Chr5	5972212	5972230	18	LOC_Os05g10810
Deletion	Chr5	6390340	6390346	6
Deletion	Chr1	7551241	7551244	3	LOC_Os01g13520
Deletion	Chr4	8189982	8189983	1
Deletion	Chr12	8415278	8415287	9	LOC_Os12g14699
Deletion	Chr12	9385641	9385642	1	LOC_Os12g16400
Deletion	Chr2	10836073	10836075	2
Deletion	Chr3	12388474	12388483	9
Deletion	Chr3	13692745	13692746	1	LOC_Os03g24120
Deletion	Chr12	14419460	14419461	1
Deletion	Chr3	17036926	17036927	1
Deletion	Chr11	17634923	17634931	8
Deletion	Chr4	20207274	20207280	6
Deletion	Chr12	23441685	23441686	1
Deletion	Chr12	23576052	23576056	4
Deletion	Chr4	23789025	23789030	5
Deletion	Chr1	29484728	29484729	1
Deletion	Chr2	33953224	33953225	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	17751133	17751135	3
Insertion	Chr2	18453732	18453739	8

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2481858	5514384	LOC_Os08g09510
Inversion	Chr2	32876654	33674263	LOC_Os02g54970

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1863441	Chr2	16489481	2
Translocation	Chr12	12294640	Chr4	14225184
Translocation	Chr10	15476024	Chr3	18904931

Main menu