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Mutant Information

Mutant Name	FN512-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN512-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3393632	G-A	HOMO	INTERGENIC
SBS	Chr1	13187750	C-T	HET	INTERGENIC
SBS	Chr1	29344350	G-C	HOMO	INTERGENIC
SBS	Chr2	18850283	G-T	HOMO	INTRON
SBS	Chr2	21112077	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g35150
SBS	Chr2	29691255	A-G	HET	INTERGENIC
SBS	Chr3	487107	C-T	HOMO	INTERGENIC
SBS	Chr3	532718	A-T	HET	INTERGENIC
SBS	Chr3	21554011	C-T	HOMO	INTERGENIC
SBS	Chr3	25275290	C-T	HET	INTERGENIC
SBS	Chr4	5155134	A-C	HET	INTERGENIC
SBS	Chr4	5997076	T-A	HET	INTERGENIC
SBS	Chr4	14859046	C-T	HET	INTERGENIC
SBS	Chr4	20788602	A-G	HOMO	INTERGENIC
SBS	Chr4	20788608	T-G	HOMO	INTERGENIC
SBS	Chr4	21840637	A-C	HET	INTERGENIC
SBS	Chr4	29802420	T-A	HET	INTERGENIC
SBS	Chr5	8823162	G-A	HOMO	INTRON
SBS	Chr5	13629248	A-C	HOMO	INTERGENIC
SBS	Chr6	3801224	T-C	HET	UTR_3_PRIME
SBS	Chr6	13025327	C-T	HOMO	INTERGENIC
SBS	Chr6	25288518	A-T	HET	INTERGENIC
SBS	Chr6	30436203	G-A	HOMO	INTRON
SBS	Chr7	4629321	T-C	HET	INTRON
SBS	Chr7	5160802	G-C	HET	INTERGENIC
SBS	Chr7	5206663	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g09770
SBS	Chr7	8568985	G-T	HET	INTERGENIC
SBS	Chr7	10572017	C-A	HET	INTRON
SBS	Chr7	14637299	G-T	HET	INTERGENIC
SBS	Chr7	20783800	G-A	HOMO	INTRON
SBS	Chr8	12549247	C-T	HET	INTERGENIC
SBS	Chr8	13777220	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	16009483	T-C	HET	INTERGENIC
SBS	Chr9	20883495	A-G	HET	INTERGENIC
SBS	Chr10	3672465	C-T	HET	INTERGENIC
SBS	Chr10	13034035	G-A	HET	INTERGENIC
SBS	Chr10	14394005	A-T	HET	INTERGENIC
SBS	Chr10	20308300	C-A	HET	SYNONYMOUS_CODING
SBS	Chr10	20308301	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g37920
SBS	Chr11	3727284	T-A	HET	INTERGENIC
SBS	Chr11	9459651	T-A	HET	INTERGENIC
SBS	Chr11	18950872	A-T	HET	INTERGENIC
SBS	Chr11	18950873	T-A	HET	INTERGENIC
SBS	Chr11	21297944	T-C	HET	SYNONYMOUS_CODING

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	4940681	4940684	3
Deletion	Chr10	5267001	5341000	74000	13
Deletion	Chr1	6182883	6185348	2465	LOC_Os01g11480
Deletion	Chr2	8754823	8754825	2	LOC_Os02g15580
Deletion	Chr8	11108537	11108538	1
Deletion	Chr12	13174230	13174233	3
Deletion	Chr6	13297173	13297178	5	LOC_Os06g22810
Deletion	Chr11	13631614	13631623	9
Deletion	Chr7	13651001	13662000	11000	3
Deletion	Chr12	14638362	14638374	12
Deletion	Chr1	15642756	15642761	5
Deletion	Chr10	17933430	17933437	7
Deletion	Chr8	19238883	19238885	2
Deletion	Chr10	20894570	20894571	1
Deletion	Chr4	21736444	21736469	25
Deletion	Chr12	21916033	21916038	5
Deletion	Chr12	26326335	26326345	10	LOC_Os12g42340
Deletion	Chr7	26537476	26537477	1
Deletion	Chr6	28078797	28078798	1
Deletion	Chr4	30057564	30057588	24
Deletion	Chr4	33342906	33342907	1
Deletion	Chr1	38967436	38967437	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11768578	11768579	2
Insertion	Chr3	6552857	6552857	1
Insertion	Chr6	8095788	8095788	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5583804	7649894	2
Inversion	Chr7	5627210	7649877	LOC_Os07g13340
Inversion	Chr6	22487425	22521001

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	5301381	Chr6	14553623	LOC_Os10g09800
Translocation	Chr12	15184220	Chr3	34394752	LOC_Os03g60509
Translocation	Chr9	21485600	Chr7	24527375	LOC_Os07g40986
Translocation	Chr7	23795722	Chr1	6185327
Translocation	Chr7	23795724	Chr1	6182885

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