Search Results
| Mutant Information |
|---|
| Mutant Name | FN514-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN514-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14711939 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 28432520 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g49440 |
| SBS | Chr2 | 29861427 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g48790 |
| SBS | Chr2 | 29861428 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g48790 |
| SBS | Chr3 | 21949846 | C-A | HET | INTERGENIC | |
| SBS | Chr3 | 26709266 | T-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 31235780 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 1781137 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g03890 |
| SBS | Chr4 | 10878885 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g19540 |
| SBS | Chr5 | 11732445 | C-A | HET | INTERGENIC | |
| SBS | Chr5 | 18507539 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 25683839 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 30744284 | A-G | HET | INTERGENIC | |
| SBS | Chr7 | 3745279 | G-T | HET | INTERGENIC | |
| SBS | Chr7 | 18226425 | G-A | HOMO | INTRON | |
| SBS | Chr7 | 29614376 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 17500567 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr9 | 3861604 | C-G | HET | INTRON | |
| SBS | Chr9 | 6070287 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 4193744 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g07578 |
| SBS | Chr10 | 8271200 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 6160944 | G-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 7070725 | T-C | HOMO | INTERGENIC | |
| SBS | Chr11 | 11179822 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 11797695 | A-C | HET | INTRON | |
| SBS | Chr11 | 26639967 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g44100 |
| SBS | Chr12 | 3771042 | T-G | HET | INTERGENIC | |
| SBS | Chr12 | 12648895 | C-T | HET | STOP_GAINED | LOC_Os12g22400 |
| SBS | Chr12 | 13302370 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g23520 |
| SBS | Chr12 | 15900156 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 27127261 | G-A | HET | INTERGENIC |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 1978710 | 1978721 | 11 | LOC_Os01g04450 |
| Deletion | Chr7 | 2403296 | 2403301 | 5 | |
| Deletion | Chr11 | 3138394 | 3138397 | 3 | LOC_Os11g06500 |
| Deletion | Chr4 | 4194737 | 4194738 | 1 | LOC_Os04g07870 |
| Deletion | Chr2 | 4280549 | 4280581 | 32 | LOC_Os02g08100 |
| Deletion | Chr10 | 4505679 | 4505695 | 16 | |
| Deletion | Chr1 | 8155052 | 8155053 | 1 | |
| Deletion | Chr6 | 14988582 | 14988583 | 1 | LOC_Os06g25650 |
| Deletion | Chr10 | 15539010 | 15539012 | 2 | |
| Deletion | Chr11 | 20733495 | 20733501 | 6 | |
| Deletion | Chr6 | 25077718 | 25077723 | 5 | |
| Deletion | Chr12 | 27282525 | 27282526 | 1 | |
| Deletion | Chr2 | 29863740 | 29863741 | 1 | |
| Deletion | Chr4 | 35352996 | 35352998 | 2 | |
| Deletion | Chr1 | 42041276 | 42041277 | 1 | LOC_Os01g72500 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 20608471 | 20608472 | 2 | |
| Insertion | Chr3 | 34880012 | 34880012 | 1 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 1267253 | Chr1 | 131680 | 2 |
| Translocation | Chr11 | 3684700 | Chr6 | 11347731 | |
| Translocation | Chr12 | 13351145 | Chr11 | 9473074 | LOC_Os11g17080 |
| Translocation | Chr8 | 17546062 | Chr4 | 9601802 |