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Mutant Information

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15043653	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g27000
SBS	Chr1	22972549	A-T	HOMO	INTERGENIC
SBS	Chr1	28874258	G-A	HOMO	INTERGENIC
SBS	Chr1	41360193	C-A	HET	INTERGENIC
SBS	Chr2	27760999	T-A	HOMO	INTRON
SBS	Chr3	5776600	T-C	HOMO	INTERGENIC
SBS	Chr3	5776605	T-C	HOMO	INTERGENIC
SBS	Chr3	5776613	A-T	HOMO	INTERGENIC
SBS	Chr5	14777158	A-G	HET	INTERGENIC
SBS	Chr5	15512509	A-G	HET	INTERGENIC
SBS	Chr5	29705021	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g51770
SBS	Chr6	10639713	T-A	HOMO	INTERGENIC
SBS	Chr7	567552	T-C	HOMO	INTERGENIC
SBS	Chr7	8659896	T-A	HOMO	INTERGENIC
SBS	Chr8	24699097	A-T	HET	INTERGENIC
SBS	Chr9	11166764	A-G	HET	SYNONYMOUS_CODING
SBS	Chr9	22593458	T-A	HET	INTERGENIC
SBS	Chr10	4423702	T-C	HOMO	INTRON
SBS	Chr10	7751429	C-A	HET	INTRON
SBS	Chr12	2211031	A-G	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2210269	2210275	6
Deletion	Chr3	2523970	2523992	22
Deletion	Chr7	2845644	2845652	8
Deletion	Chr2	2871400	2871413	13	LOC_Os02g05820
Deletion	Chr5	8494310	8494836	526	LOC_Os05g14970
Deletion	Chr8	9663001	10033000	370000	54
Deletion	Chr5	11214386	11214391	5
Deletion	Chr5	11519684	11519685	1
Deletion	Chr7	11764810	11764812	2
Deletion	Chr7	14944655	14944660	5
Deletion	Chr7	15543175	15543182	7
Deletion	Chr5	17921787	17921788	1
Deletion	Chr6	19992126	19992135	9
Deletion	Chr8	21587774	21587775	1
Deletion	Chr12	21902026	21902027	1
Deletion	Chr11	23880993	23881001	8	LOC_Os11g40050
Deletion	Chr7	25523474	25523477	3
Deletion	Chr4	27286673	27286676	3
Deletion	Chr1	29455096	29455154	58

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	19331298	19331299	2
Insertion	Chr7	17560179	17560180	2
Insertion	Chr11	27585620	27585621	2
Insertion	Chr2	21772380	21772381	2
Insertion	Chr6	8817484	8817484	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	893298	1309487	LOC_Os06g02560
Inversion	Chr2	5772839	17587028

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	8494870	Chr1	10805423	LOC_Os05g14970
Translocation	Chr8	9957674	Chr3	19731910
Translocation	Chr11	21327640	Chr3	25354096

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr3	36136483	36140436	3953

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