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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	38147101	G-A	HET	UTR_3_PRIME
SBS	Chr10	17176220	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g32800
SBS	Chr10	9372379	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g18440
SBS	Chr11	4296545	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g08200
SBS	Chr12	15592242	T-A	HET	INTERGENIC
SBS	Chr12	22567382	G-A	HET	INTERGENIC
SBS	Chr2	24216199	A-G	HOMO	INTERGENIC
SBS	Chr2	27916539	A-G	HOMO	INTERGENIC
SBS	Chr2	30374341	C-A	HET	INTERGENIC
SBS	Chr3	10869565	G-A	HET	INTRON
SBS	Chr3	17045407	A-T	HOMO	INTERGENIC
SBS	Chr3	4467224	C-T	HOMO	INTERGENIC
SBS	Chr4	12964274	G-A	HOMO	INTERGENIC
SBS	Chr4	1434018	G-A	HET	INTERGENIC
SBS	Chr4	21198085	T-A	HOMO	INTERGENIC
SBS	Chr4	21966890	T-A	HOMO	INTRON
SBS	Chr4	25595922	A-G	HOMO	INTERGENIC
SBS	Chr5	25708802	T-A	HET	INTERGENIC
SBS	Chr6	14874960	G-A	HOMO	INTERGENIC
SBS	Chr6	1766278	G-A	HET	UTR_5_PRIME
SBS	Chr6	5728337	G-A	HOMO	INTERGENIC
SBS	Chr7	16605400	G-T	HOMO	INTRON
SBS	Chr7	29078972	A-G	HET	INTRON
SBS	Chr8	10732913	C-T	HET	INTERGENIC
SBS	Chr8	9522424	C-G	HET	INTERGENIC
SBS	Chr9	15985263	T-C	HET	INTRON
SBS	Chr9	1719934	C-T	HET	INTERGENIC
SBS	Chr9	17270614	G-A	HET	INTERGENIC
SBS	Chr9	18291888	C-T	HET	SYNONYMOUS_CODING

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	252001	421000	169000	32
Deletion	Chr11	1639635	1639637	2
Deletion	Chr8	4843001	4910000	67000	10
Deletion	Chr4	10642087	10642095	8
Deletion	Chr9	12429001	12533000	104000	17
Deletion	Chr3	15300188	15300198	10
Deletion	Chr11	15514605	15514609	4
Deletion	Chr1	35875712	35875720	8

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	265371	265380	10
Insertion	Chr12	11007901	11007902	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	908002	993099	LOC_Os09g02250
Inversion	Chr11	3939269	14165977
Inversion	Chr8	10065618	10102362	LOC_Os08g16480
Inversion	Chr9	16763073	17063405	LOC_Os09g28110
Inversion	Chr9	16763096	17064230	LOC_Os09g28110

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4302175	Chr9	17063414	LOC_Os09g28110
Translocation	Chr3	10134113	Chr1	18684954	LOC_Os01g33960
Translocation	Chr9	12531373	Chr1	35823303
Translocation	Chr11	14166403	Chr9	993094
Translocation	Chr10	18248116	Chr9	12530515
Translocation	Chr10	18248158	Chr1	35824154
Translocation	Chr7	26374110	Chr5	2991374
Translocation	Chr2	34184047	Chr1	36678629	LOC_Os02g55840

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