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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4422000	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g08810
SBS	Chr1	7214137	G-A	HET	UTR_3_PRIME
SBS	Chr1	23500587	A-G	HET	INTRON
SBS	Chr3	22350983	G-A	HET	UTR_5_PRIME
SBS	Chr3	25024420	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g44470
SBS	Chr4	1605980	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr4	8988367	A-T	HET	INTRON
SBS	Chr4	19338972	A-T	HET	INTERGENIC
SBS	Chr4	21309096	T-C	HET	INTERGENIC
SBS	Chr5	5150543	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g09210
SBS	Chr5	23888171	C-A	HET	SYNONYMOUS_CODING
SBS	Chr5	26364523	G-T	HET	INTERGENIC
SBS	Chr6	8342751	T-G	HET	INTERGENIC
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr7	11312094	G-A	HET	INTERGENIC
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr9	6086294	C-T	HET	INTERGENIC
SBS	Chr9	16863774	C-T	HOMO	INTERGENIC
SBS	Chr10	21107645	T-C	HET	INTRON
SBS	Chr11	10124138	C-T	HET	INTERGENIC
SBS	Chr11	10512492	G-T	HOMO	INTERGENIC
SBS	Chr11	14500467	C-T	HOMO	INTERGENIC
SBS	Chr12	1449000	G-A	HET	INTERGENIC
SBS	Chr12	20353520	A-G	HET	INTERGENIC

Deletions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	365001	952000	587000	91
Deletion	Chr11	1134610	1134611	1	LOC_Os11g03150
Deletion	Chr10	2175547	2175552	5
Deletion	Chr12	22434136	22434141	5
Deletion	Chr7	28921032	28921036	4	LOC_Os07g48390

No Insertion

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	12773562	12789047	LOC_Os02g21550
Inversion	Chr5	26876403	27769004

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2761234	Chr1	26316065	2
Translocation	Chr8	12879645	Chr1	17178357

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