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Mutant Information |
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Mutant Name | FN520-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN520-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 19
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 9949579 | G-A | HOMO | INTERGENIC | |
SBS | Chr1 | 33172980 | C-A | HOMO | INTERGENIC | |
SBS | Chr1 | 36808467 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g63500 |
SBS | Chr2 | 3013494 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g06040 |
SBS | Chr2 | 6466097 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 21966459 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g36030 |
SBS | Chr4 | 21966460 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g36030 |
SBS | Chr4 | 26194771 | A-T | HET | INTERGENIC | |
SBS | Chr5 | 123675 | G-C | HET | INTERGENIC | |
SBS | Chr5 | 13391861 | A-T | HOMO | INTERGENIC | |
SBS | Chr5 | 15305393 | G-A | HOMO | SYNONYMOUS_CODING | |
SBS | Chr5 | 25513621 | A-T | HET | INTERGENIC | |
SBS | Chr7 | 8210151 | C-A | HOMO | INTERGENIC | |
SBS | Chr7 | 8771040 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 2607925 | A-T | HET | INTRON | |
SBS | Chr9 | 12275908 | C-G | HET | INTERGENIC | |
SBS | Chr9 | 20652052 | T-A | HET | INTERGENIC | |
SBS | Chr10 | 8606121 | T-G | HET | INTERGENIC | |
SBS | Chr12 | 10954655 | G-A | HOMO | INTERGENIC |
Deletions: 23
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr3 | 147052 | 147056 | 4 | LOC_Os03g01222 |
Deletion | Chr5 | 1367790 | 1367792 | 2 | |
Deletion | Chr1 | 1564742 | 1564744 | 2 | LOC_Os01g03740 |
Deletion | Chr6 | 1631213 | 1631224 | 11 | |
Deletion | Chr5 | 2305084 | 2305086 | 2 | |
Deletion | Chr3 | 6582968 | 6582969 | 1 | |
Deletion | Chr2 | 7339091 | 7339101 | 10 | |
Deletion | Chr9 | 8520733 | 8520742 | 9 | |
Deletion | Chr6 | 12776204 | 12776205 | 1 | |
Deletion | Chr9 | 17254330 | 17254344 | 14 | |
Deletion | Chr5 | 20069905 | 20069910 | 5 | LOC_Os05g33990 |
Deletion | Chr5 | 21740488 | 21740508 | 20 | |
Deletion | Chr2 | 25410458 | 25410466 | 8 | |
Deletion | Chr3 | 25882711 | 25882712 | 1 | |
Deletion | Chr3 | 26600626 | 26611316 | 10690 | 3 |
Deletion | Chr6 | 27093032 | 27093039 | 7 | |
Deletion | Chr4 | 27694743 | 27694745 | 2 | |
Deletion | Chr3 | 28466294 | 28466296 | 2 | |
Deletion | Chr3 | 28621589 | 28621595 | 6 | |
Deletion | Chr3 | 32254303 | 32254309 | 6 | LOC_Os03g56630 |
Deletion | Chr3 | 34101443 | 34101444 | 1 | |
Deletion | Chr1 | 35421970 | 35421977 | 7 | |
Deletion | Chr1 | 36287923 | 36287938 | 15 | LOC_Os01g62660 |
Insertions: 5
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr3 | 15952782 | 15952782 | 1 | |
Insertion | Chr6 | 25246934 | 25246935 | 2 | |
Insertion | Chr12 | 3262544 | 3262545 | 2 | LOC_Os12g06700 |
Insertion | Chr12 | 20045598 | 20045598 | 1 | LOC_Os12g33130 |
Insertion | Chr5 | 8439564 | 8439564 | 1 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr3 | 8982313 | 9019496 | |
Inversion | Chr4 | 26093926 | 26211310 | |
Inversion | Chr4 | 26093940 | 26211321 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 906378 | Chr2 | 18422080 | |
Translocation | Chr11 | 22169093 | Chr2 | 10151790 | LOC_Os11g37540 |
Translocation | Chr6 | 23463437 | Chr3 | 29226757 | LOC_Os06g39515 |