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Mutant Information

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	33172980	C-A	HOMO	INTERGENIC
SBS	Chr1	36808467	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g63500
SBS	Chr1	9949579	G-A	HOMO	INTERGENIC
SBS	Chr10	8606121	T-G	HET	INTERGENIC
SBS	Chr12	10954655	G-A	HOMO	INTERGENIC
SBS	Chr2	3013494	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g06040
SBS	Chr2	6466097	A-G	HET	INTERGENIC
SBS	Chr4	21966459	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g36030
SBS	Chr4	21966460	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g36030
SBS	Chr4	26194771	A-T	HET	INTERGENIC
SBS	Chr5	123675	G-C	HET	INTERGENIC
SBS	Chr5	13391861	A-T	HOMO	INTERGENIC
SBS	Chr5	15305393	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	25513621	A-T	HET	INTERGENIC
SBS	Chr7	8210151	C-A	HOMO	INTERGENIC
SBS	Chr7	8771040	C-T	HET	INTERGENIC
SBS	Chr8	2607925	A-T	HET	INTRON
SBS	Chr9	12275908	C-G	HET	INTERGENIC
SBS	Chr9	20652052	T-A	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	147052	147056	4	LOC_Os03g01222
Deletion	Chr5	1367790	1367792	2
Deletion	Chr1	1564742	1564744	2	LOC_Os01g03740
Deletion	Chr6	1631213	1631224	11
Deletion	Chr5	2305084	2305086	2
Deletion	Chr3	6582968	6582969	1
Deletion	Chr2	7339091	7339101	10
Deletion	Chr9	8520733	8520742	9
Deletion	Chr6	12776204	12776205	1
Deletion	Chr9	17254330	17254344	14
Deletion	Chr5	20069905	20069910	5	LOC_Os05g33990
Deletion	Chr5	21740488	21740508	20
Deletion	Chr2	25410458	25410466	8
Deletion	Chr3	25882711	25882712	1
Deletion	Chr3	26600626	26611316	10690	3
Deletion	Chr6	27093032	27093039	7
Deletion	Chr4	27694743	27694745	2
Deletion	Chr3	28466294	28466296	2
Deletion	Chr3	28621589	28621595	6
Deletion	Chr3	32254303	32254309	6	LOC_Os03g56630
Deletion	Chr3	34101443	34101444	1
Deletion	Chr1	35421970	35421977	7
Deletion	Chr1	36287923	36287938	15	LOC_Os01g62660

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	20045598	20045598	1	LOC_Os12g33130
Insertion	Chr12	3262544	3262545	2	LOC_Os12g06700
Insertion	Chr3	15952782	15952782	1
Insertion	Chr5	8439564	8439564	1
Insertion	Chr6	25246934	25246935	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr3	8982313	9019496
Inversion	Chr4	26093926	26211310
Inversion	Chr4	26093940	26211321

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	906378	Chr2	18422080
Translocation	Chr11	22169093	Chr2	10151790	LOC_Os11g37540
Translocation	Chr6	23463437	Chr3	29226757	LOC_Os06g39515

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