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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15038411	C-T	HET	INTERGENIC
SBS	Chr1	20851564	T-G	HET	INTRON
SBS	Chr1	25098383	C-T	HET	INTERGENIC
SBS	Chr1	25098384	A-T	HET	INTERGENIC
SBS	Chr1	34539711	T-C	HET	INTERGENIC
SBS	Chr1	36381112	T-C	HET	SYNONYMOUS_CODING
SBS	Chr1	41402552	T-C	HOMO	INTERGENIC
SBS	Chr11	11616175	C-T	HET	INTERGENIC
SBS	Chr11	13579024	G-A	HET	INTERGENIC
SBS	Chr11	14800675	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	24279075	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g40680
SBS	Chr12	1323663	G-A	HET	UTR_3_PRIME
SBS	Chr12	19741952	G-A	HET	INTRON
SBS	Chr12	20409447	G-A	HET	INTERGENIC
SBS	Chr12	7720233	G-A	HET	INTERGENIC
SBS	Chr2	28690409	A-T	HET	INTRON
SBS	Chr3	15960352	A-T	HET	INTERGENIC
SBS	Chr3	32797005	G-A	HET	INTERGENIC
SBS	Chr4	10553685	C-T	HOMO	INTRON
SBS	Chr4	12807171	C-A	HET	INTERGENIC
SBS	Chr4	6871254	G-A	HET	UTR_5_PRIME
SBS	Chr5	15696575	A-T	HET	INTERGENIC
SBS	Chr5	15696576	G-C	HET	INTERGENIC
SBS	Chr5	1800351	A-T	HET	INTERGENIC
SBS	Chr5	20332219	A-T	HET	INTERGENIC
SBS	Chr5	5850668	G-A	HET	INTERGENIC
SBS	Chr5	6746149	G-C	HET	INTERGENIC
SBS	Chr6	25337731	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g42200
SBS	Chr6	375475	A-G	HOMO	INTERGENIC
SBS	Chr6	375480	A-T	HOMO	INTERGENIC
SBS	Chr6	5334656	G-A	HOMO	SPLICE_SITE_DONOR	LOC_Os06g10380
SBS	Chr6	5334657	T-A	HOMO	SPLICE_SITE_DONOR	LOC_Os06g10380
SBS	Chr7	12557332	G-A	HOMO	INTERGENIC
SBS	Chr7	16396100	T-A	HOMO	INTERGENIC
SBS	Chr7	6201360	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	6656326	T-G	HET	INTERGENIC
SBS	Chr7	718708	A-T	HOMO	INTRON
SBS	Chr8	18087953	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g29500
SBS	Chr8	18087954	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g29500
SBS	Chr8	19543233	G-A	HET	INTERGENIC
SBS	Chr9	21496986	C-T	HOMO	INTRON

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	246629	246631	2	LOC_Os05g01420
Deletion	Chr11	3245519	3245520	1
Deletion	Chr9	4093645	4093654	9
Deletion	Chr8	4656179	4656184	5
Deletion	Chr9	5245417	5245418	1
Deletion	Chr6	5332880	5332885	5
Deletion	Chr12	8180665	8180674	9	LOC_Os12g14360
Deletion	Chr3	8975115	8975121	6
Deletion	Chr3	9379539	9379549	10
Deletion	Chr1	11116122	11116133	11
Deletion	Chr7	11336570	11336571	1
Deletion	Chr6	11515683	11515696	13	LOC_Os06g20090
Deletion	Chr3	13720592	13720595	3
Deletion	Chr2	14438182	14438185	3
Deletion	Chr7	15347584	15412589	65005	7
Deletion	Chr7	16395912	16395914	2
Deletion	Chr6	18121443	18121444	1
Deletion	Chr1	19253859	19253860	1
Deletion	Chr11	22322410	22322415	5
Deletion	Chr1	25284937	25284949	12	LOC_Os01g44110
Deletion	Chr7	27184326	27184327	1
Deletion	Chr6	27710612	27710613	1
Deletion	Chr6	28336470	28336471	1
Deletion	Chr2	31914435	31914441	6
Deletion	Chr1	33155888	33155895	7
Deletion	Chr3	35886826	35886837	11

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	9518323	9518324	2
Insertion	Chr3	17060877	17060877	1
Insertion	Chr3	25279434	25279435	2	LOC_Os03g44830
Insertion	Chr5	1764989	1764991	3
Insertion	Chr8	27926856	27926860	5

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	473794	8683589

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	925307	Chr11	9422842	LOC_Os12g02660
Translocation	Chr12	2597191	Chr11	9422838	LOC_Os12g05650
Translocation	Chr9	11597066	Chr6	10213552	LOC_Os06g17600
Translocation	Chr3	19375503	Chr2	2226748	2
Translocation	Chr4	24198576	Chr1	2769632
Translocation	Chr11	25650376	Chr7	9569351	LOC_Os11g42610

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