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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12736041	G-A	HOMO	INTRON
SBS	Chr1	18139205	C-T	HET	INTERGENIC
SBS	Chr1	32411948	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g56270
SBS	Chr10	5530477	C-T	HOMO	INTERGENIC
SBS	Chr11	20206196	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g34490
SBS	Chr11	27309304	G-T	HET	INTRON
SBS	Chr12	11900711	G-A	HET	INTERGENIC
SBS	Chr12	16130069	G-C	HET	INTRON
SBS	Chr12	19145230	T-A	HET	INTERGENIC
SBS	Chr12	19145231	T-A	HET	INTERGENIC
SBS	Chr12	7780656	C-T	HET	INTRON
SBS	Chr2	18042347	G-C	HOMO	INTRON
SBS	Chr2	26026477	A-C	HOMO	INTERGENIC
SBS	Chr2	33032635	G-T	HET	INTERGENIC
SBS	Chr2	3756528	C-G	HOMO	INTERGENIC
SBS	Chr2	3756535	A-T	HOMO	INTERGENIC
SBS	Chr2	8375321	G-T	HET	INTERGENIC
SBS	Chr2	8375322	A-T	HET	INTERGENIC
SBS	Chr2	9446747	T-A	HET	UTR_5_PRIME
SBS	Chr3	13257973	G-T	HET	INTERGENIC
SBS	Chr3	2120939	T-C	HET	INTRON
SBS	Chr3	370488	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	5735209	C-T	HET	INTRON
SBS	Chr4	19456729	C-T	HET	INTRON
SBS	Chr5	19033293	T-C	HET	INTERGENIC
SBS	Chr6	17308617	G-A	HET	INTERGENIC
SBS	Chr6	8615563	T-G	HET	INTERGENIC
SBS	Chr8	10556310	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g17240
SBS	Chr8	18971442	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	25197433	G-A	HOMO	INTRON
SBS	Chr8	25197434	C-T	HOMO	INTRON
SBS	Chr9	11733885	C-T	HOMO	INTERGENIC
SBS	Chr9	11733887	G-T	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2414889	2414896	7
Deletion	Chr12	4525404	4525411	7
Deletion	Chr3	5014647	5019248	4601	LOC_Os03g10010
Deletion	Chr5	6294019	6294028	9
Deletion	Chr8	6473467	6473486	19
Deletion	Chr2	6563001	6648000	85000	16
Deletion	Chr10	7631084	7631085	1
Deletion	Chr3	9423463	9423464	1
Deletion	Chr8	9749953	9749957	4	LOC_Os08g16000
Deletion	Chr8	10821951	10821976	25
Deletion	Chr12	11901001	11957000	56000	8
Deletion	Chr12	12269386	12269409	23
Deletion	Chr8	16522883	16522888	5
Deletion	Chr5	18436430	18436441	11
Deletion	Chr7	18731001	19031000	300000	38
Deletion	Chr12	19149001	19301000	152000	18
Deletion	Chr6	19578117	19578124	7
Deletion	Chr10	21574920	21574927	7
Deletion	Chr5	22669883	22669890	7
Deletion	Chr6	23291855	23291857	2	LOC_Os06g39230
Deletion	Chr11	24059964	24059980	16	LOC_Os11g40360
Deletion	Chr12	24291455	24292156	701	2
Deletion	Chr4	25232001	25262000	30000	5

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19009783	19009785	3	LOC_Os01g34480
Insertion	Chr11	13903938	13903940	3
Insertion	Chr3	29163199	29163199	1
Insertion	Chr4	21392479	21392480	2
Insertion	Chr6	10493040	10493041	2
Insertion	Chr9	4594876	4594877	2
Insertion	Chr9	5367792	5367792	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	10463201	12619219	LOC_Os08g21110
Inversion	Chr4	25187634	25286367

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	11338817	Chr6	10850161	2
Translocation	Chr12	11962593	Chr9	11114431	LOC_Os12g20470
Translocation	Chr12	24128372	Chr7	18730124	LOC_Os07g31550
Translocation	Chr12	24291455	Chr3	5019297
Translocation	Chr12	24292152	Chr4	25232112
Translocation	Chr4	25187713	Chr2	10798269

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