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| Mutant Information |
|---|
| Mutant Name | FN523-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN523-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20833777 | C-T | HOMO | INTRON | |
| SBS | Chr1 | 9262940 | C-A | HET | INTRON | |
| SBS | Chr1 | 9262941 | T-A | HET | INTRON | |
| SBS | Chr11 | 15096452 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 27472287 | G-T | HET | INTRON | |
| SBS | Chr11 | 4615621 | G-A | HET | INTRON | |
| SBS | Chr2 | 29576715 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 7481484 | A-C | HET | INTERGENIC | |
| SBS | Chr3 | 25123008 | T-C | HET | INTRON | |
| SBS | Chr3 | 30803216 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 4767502 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 10002490 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr4 | 30312438 | C-T | HET | INTRON | |
| SBS | Chr5 | 21726087 | A-C | HOMO | INTERGENIC | |
| SBS | Chr5 | 21832939 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr6 | 19621608 | C-T | HET | UTR_5_PRIME | |
| SBS | Chr6 | 8500237 | C-A | HET | INTERGENIC | |
| SBS | Chr7 | 2458484 | T-G | HOMO | UTR_3_PRIME | |
| SBS | Chr7 | 2895261 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 1666875 | C-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 5794769 | C-G | HET | INTERGENIC |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 4314951 | 4314952 | 1 | |
| Deletion | Chr10 | 8557347 | 8557360 | 13 | |
| Deletion | Chr8 | 12153983 | 12153991 | 8 | LOC_Os08g20250 |
| Deletion | Chr12 | 12552189 | 12552199 | 10 | |
| Deletion | Chr3 | 19965119 | 19965120 | 1 | |
| Deletion | Chr7 | 20974803 | 20974804 | 1 | |
| Deletion | Chr5 | 21355466 | 21355473 | 7 | LOC_Os05g36060 |
| Deletion | Chr5 | 21751844 | 21753734 | 1890 | LOC_Os05g37200 |
| Deletion | Chr6 | 22368777 | 22368785 | 8 | |
| Deletion | Chr12 | 24289218 | 24289754 | 536 | |
| Deletion | Chr12 | 26758668 | 26758669 | 1 | |
| Deletion | Chr5 | 29106134 | 29106158 | 24 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 23461991 | 23461992 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 24595656 | 27160818 | 2 |
| Inversion | Chr7 | 27567171 | 27614961 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 10125420 | Chr5 | 21751846 | LOC_Os05g37200 |
| Translocation | Chr6 | 10125423 | Chr5 | 21753767 | LOC_Os05g37200 |
| Translocation | Chr6 | 14530188 | Chr5 | 9756564 | 2 |
| Translocation | Chr6 | 14530193 | Chr5 | 9753121 | LOC_Os06g24730 |
| Translocation | Chr7 | 27873688 | Chr6 | 5287354 | LOC_Os07g46640 |