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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14323390	A-C	HOMO	INTERGENIC
SBS	Chr1	4803652	C-G	HET	INTERGENIC
SBS	Chr1	8042262	G-A	HET	INTERGENIC
SBS	Chr10	14201591	T-G	HET	INTERGENIC
SBS	Chr10	16591985	C-G	HET	INTERGENIC
SBS	Chr10	18068753	T-C	HET	INTERGENIC
SBS	Chr10	4767354	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	8377240	C-G	HOMO	INTRON
SBS	Chr11	1067115	G-A	HET	INTERGENIC
SBS	Chr11	12019987	C-T	HET	INTERGENIC
SBS	Chr11	15962234	G-A	HET	INTERGENIC
SBS	Chr11	24125141	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g40450
SBS	Chr11	27048225	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g44710
SBS	Chr11	7902282	T-A	HET	INTERGENIC
SBS	Chr11	8278287	G-A	HET	INTERGENIC
SBS	Chr12	7206074	A-G	HET	INTERGENIC
SBS	Chr12	960147	C-T	HET	INTERGENIC
SBS	Chr12	9640055	G-T	HOMO	INTERGENIC
SBS	Chr4	15242775	G-A	HET	INTRON
SBS	Chr4	18589590	C-T	HET	INTERGENIC
SBS	Chr5	6645786	C-T	HET	INTERGENIC
SBS	Chr6	13141259	C-T	HET	INTERGENIC
SBS	Chr6	15522066	G-T	HET	INTERGENIC
SBS	Chr6	2722477	T-A	HOMO	INTERGENIC
SBS	Chr6	7960298	A-T	HET	INTERGENIC
SBS	Chr6	8526061	G-C	HET	INTERGENIC
SBS	Chr7	10563308	C-T	HOMO	INTERGENIC
SBS	Chr7	10563309	C-T	HOMO	INTERGENIC
SBS	Chr7	25234811	C-G	HET	INTERGENIC
SBS	Chr7	555226	T-C	HET	INTERGENIC
SBS	Chr8	15826152	C-G	HET	INTRON
SBS	Chr8	19048966	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30860
SBS	Chr9	16693233	C-T	HET	INTERGENIC
SBS	Chr9	2037727	C-T	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	3823067	3823082	15	LOC_Os09g07610
Deletion	Chr5	5142488	5142496	8
Deletion	Chr7	5811492	5811545	53	LOC_Os07g10690
Deletion	Chr4	6365104	6365106	2
Deletion	Chr12	8388193	8388194	1
Deletion	Chr9	8873316	8873327	11
Deletion	Chr7	10563313	10563317	4
Deletion	Chr11	12679318	12679324	6
Deletion	Chr7	17608689	17621501	12812	LOC_Os07g29920
Deletion	Chr7	18996446	18996450	4
Deletion	Chr3	19673001	19882000	209000	27
Deletion	Chr3	19884001	19976000	92000	15
Deletion	Chr5	20772131	20772132	1
Deletion	Chr1	21056541	21056550	9
Deletion	Chr1	21123361	21123378	17	LOC_Os01g37760
Deletion	Chr11	22273337	22273338	1	LOC_Os11g37700
Deletion	Chr8	22355028	22355029	1	LOC_Os08g35470
Deletion	Chr9	22403749	22403774	25	LOC_Os09g39020
Deletion	Chr3	22408727	22408732	5
Deletion	Chr1	25122688	25122728	40
Deletion	Chr12	25255268	25255269	1
Deletion	Chr7	26816952	26816968	16	LOC_Os07g44960
Deletion	Chr2	30790997	30791006	9	LOC_Os02g50430
Deletion	Chr3	31285209	31285214	5

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	18826455	18826455	1
Insertion	Chr10	11958100	11958101	2
Insertion	Chr10	12086750	12086750	1	LOC_Os10g23160
Insertion	Chr8	24721344	24721345	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4446145	16367899
Inversion	Chr6	12558377	13707621	2
Inversion	Chr5	13517500	13701623	LOC_Os05g23570

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	822540	Chr4	16367929	LOC_Os11g02600
Translocation	Chr5	8428042	Chr1	23528724	LOC_Os05g14820
Translocation	Chr11	25606195	Chr7	26100972
Translocation	Chr11	25606198	Chr7	26100846

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