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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12511647	C-G	HOMO	INTRON
SBS	Chr1	27435822	T-C	HOMO	INTERGENIC
SBS	Chr1	32885503	G-A	HET	INTERGENIC
SBS	Chr1	39765489	C-T	HET	INTERGENIC
SBS	Chr1	8914910	C-T	HET	INTERGENIC
SBS	Chr10	3889938	C-T	HOMO	INTERGENIC
SBS	Chr11	11566919	C-A	HET	INTERGENIC
SBS	Chr11	13788215	T-A	HET	INTERGENIC
SBS	Chr12	22723359	A-G	HET	UTR_3_PRIME
SBS	Chr12	23814415	T-A	HET	INTERGENIC
SBS	Chr2	17679326	A-C	HOMO	INTERGENIC
SBS	Chr2	33452980	G-T	HET	INTERGENIC
SBS	Chr2	33452981	G-T	HET	INTERGENIC
SBS	Chr3	26103460	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g46170
SBS	Chr3	329969	T-C	HET	INTERGENIC
SBS	Chr4	25264511	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	15987347	G-A	HET	INTERGENIC
SBS	Chr7	20650492	C-A	HOMO	INTRON
SBS	Chr8	23704206	T-A	HOMO	INTERGENIC
SBS	Chr8	27000297	A-T	HET	INTERGENIC
SBS	Chr9	2416264	A-G	HOMO	INTRON

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	631033	631044	11
Deletion	Chr9	4206960	4206961	1
Deletion	Chr7	4326357	4326358	1	LOC_Os07g08420
Deletion	Chr11	4410388	4410390	2
Deletion	Chr10	5563003	5563008	5
Deletion	Chr1	5730976	5731107	131
Deletion	Chr2	8441428	8441437	9
Deletion	Chr9	8476625	8476629	4
Deletion	Chr10	8914072	8914079	7
Deletion	Chr8	9338440	9338441	1
Deletion	Chr8	11067511	11067518	7
Deletion	Chr6	15148899	15148908	9
Deletion	Chr7	16844771	16844778	7
Deletion	Chr12	17420445	17420454	9	LOC_Os12g29350
Deletion	Chr6	17763099	17763100	1
Deletion	Chr5	21363945	21363948	3
Deletion	Chr1	21914645	21914646	1
Deletion	Chr8	23296001	23344000	48000	5
Deletion	Chr4	23572747	23572758	11
Deletion	Chr5	25564206	25569080	4874	LOC_Os05g43930
Deletion	Chr1	29683880	29683881	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	8930793	8930795	3
Insertion	Chr10	11739229	11739230	2
Insertion	Chr7	20126629	20126630	2
Insertion	Chr7	2174770	2174770	1

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6993247	Chr3	22046065
Translocation	Chr8	14785729	Chr1	20577303
Translocation	Chr6	22819227	Chr4	29199076	LOC_Os04g48960
Translocation	Chr6	22949840	Chr4	29199069	LOC_Os04g48960
Translocation	Chr5	25564240	Chr2	29257101
Translocation	Chr5	25569071	Chr2	29257060

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