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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14896775	A-T	HOMO	INTRON
SBS	Chr1	39860597	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g68630
SBS	Chr1	39860600	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g68630
SBS	Chr10	1680199	C-T	HET	INTERGENIC
SBS	Chr10	17134166	G-A	HET	STOP_GAINED	LOC_Os10g32730
SBS	Chr12	14640052	T-C	HET	INTERGENIC
SBS	Chr2	15685897	A-T	HOMO	INTERGENIC
SBS	Chr2	15685898	C-T	HOMO	INTERGENIC
SBS	Chr2	16008461	C-A	HOMO	INTRON
SBS	Chr2	2144981	C-T	HOMO	INTERGENIC
SBS	Chr2	26249903	A-G	HOMO	INTRON
SBS	Chr2	32032299	G-T	HET	INTRON
SBS	Chr2	33025263	T-G	HET	INTERGENIC
SBS	Chr3	15497178	C-T	HOMO	INTERGENIC
SBS	Chr4	27918585	G-A	HET	INTRON
SBS	Chr4	34367384	G-A	HET	INTERGENIC
SBS	Chr5	2510351	A-G	HET	INTERGENIC
SBS	Chr5	27550577	A-T	HET	INTERGENIC
SBS	Chr5	3074282	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	13809580	A-T	HET	INTERGENIC
SBS	Chr6	16409190	A-G	HET	INTRON
SBS	Chr6	19937215	T-G	HOMO	INTRON
SBS	Chr6	24894585	T-G	HET	INTRON
SBS	Chr8	961167	A-T	HET	INTERGENIC
SBS	Chr9	13736669	C-T	HET	INTERGENIC
SBS	Chr9	18465678	G-A	HET	SYNONYMOUS_CODING

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1361070	1361071	1
Deletion	Chr6	3444313	3444328	15
Deletion	Chr1	9110056	9110057	1
Deletion	Chr3	9744337	9744348	11	LOC_Os03g17540
Deletion	Chr10	11676219	11676220	1
Deletion	Chr3	12248591	12248603	12
Deletion	Chr12	13528199	13528205	6
Deletion	Chr12	13626503	13626504	1	LOC_Os12g23980
Deletion	Chr9	13736554	13736557	3
Deletion	Chr10	14512081	14512082	1
Deletion	Chr7	14810609	14810614	5
Deletion	Chr1	16644372	16644374	2
Deletion	Chr1	18247878	18247890	12
Deletion	Chr8	18299323	18299338	15	LOC_Os08g29760
Deletion	Chr6	29158839	29158841	2
Deletion	Chr1	31169682	31169688	6
Deletion	Chr2	34722840	34722880	40	LOC_Os02g56630

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	28120293	28120298	6

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	11163543	19963292	LOC_Os12g19250
Inversion	Chr8	11976352	12661602	2
Inversion	Chr8	18101176	18163417	LOC_Os08g29520
Inversion	Chr7	23393617	27573608	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	11188354	Chr6	10464858
Translocation	Chr8	11976259	Chr2	28199942	2
Translocation	Chr8	12661595	Chr2	28199469	2
Translocation	Chr10	13430858	Chr5	5645856	LOC_Os05g10340

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