Search Results
| Mutant Information |
|---|
| Mutant Name | FN529-BCF2-10 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN529-BCF2-10 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 44
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12212618 | T-G | HET | INTERGENIC | |
| SBS | Chr1 | 35991865 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 42829464 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 4371978 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 8134828 | C-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 13619513 | C-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 31842109 | C-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 31923116 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 33875787 | G-T | HET | INTERGENIC | |
| SBS | Chr3 | 5806771 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g11280 |
| SBS | Chr3 | 19061318 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g33328 |
| SBS | Chr3 | 19061319 | T-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr3 | 34035442 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 34035450 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 463342 | C-A | HET | INTERGENIC | |
| SBS | Chr4 | 2188761 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 2377219 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g04930 |
| SBS | Chr4 | 3323264 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g06360 |
| SBS | Chr4 | 3937339 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 13899694 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 17503798 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g29440 |
| SBS | Chr4 | 18646165 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 20210146 | T-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 20882706 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g34490 |
| SBS | Chr5 | 4082372 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 9919964 | G-C | HOMO | INTERGENIC | |
| SBS | Chr5 | 12209058 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g20800 |
| SBS | Chr5 | 14322126 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g24710 |
| SBS | Chr6 | 14343904 | G-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 8221151 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 9327581 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 9881121 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 17309954 | A-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 18921439 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 14119695 | G-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 3576186 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 5445555 | G-C | HET | INTRON | |
| SBS | Chr10 | 14835531 | A-T | HOMO | INTRON | |
| SBS | Chr11 | 2888404 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 2750704 | T-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 2920612 | G-T | HOMO | INTRON | |
| SBS | Chr12 | 15625988 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 23768261 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 24278726 | T-A | HOMO | INTERGENIC |
No Deletion
No Insertion
No Inversion
No Translocation