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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	43140227	A-G	HET	INTERGENIC
SBS	Chr10	1974669	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g04240
SBS	Chr11	1062294	A-C	HET	INTERGENIC
SBS	Chr12	12371239	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g21990
SBS	Chr12	15920654	T-G	HET	INTERGENIC
SBS	Chr2	18702235	G-A	HET	INTERGENIC
SBS	Chr2	27050609	T-A	HET	INTRON
SBS	Chr2	35413813	C-A	HOMO	INTERGENIC
SBS	Chr3	11245927	T-C	HET	INTRON
SBS	Chr3	22038798	G-T	HET	INTERGENIC
SBS	Chr4	11142254	G-T	HOMO	INTRON
SBS	Chr4	11759723	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g20950
SBS	Chr4	12478871	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g22030
SBS	Chr4	22533771	G-A	HOMO	INTERGENIC
SBS	Chr4	2361885	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	25430733	A-T	HET	INTERGENIC
SBS	Chr4	25668861	G-T	HET	INTERGENIC
SBS	Chr4	7279312	G-A	HOMO	INTRON
SBS	Chr5	27317756	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g47670
SBS	Chr5	27317757	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	29484051	T-C	HET	INTRON
SBS	Chr5	4882662	T-A	HET	INTRON
SBS	Chr6	11569199	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	23187259	C-A	HOMO	UTR_3_PRIME
SBS	Chr6	23187260	G-A	HOMO	UTR_3_PRIME
SBS	Chr6	29862591	C-T	HET	INTERGENIC
SBS	Chr7	14742841	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g25700
SBS	Chr7	15592494	G-A	HOMO	INTERGENIC
SBS	Chr8	21906220	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g34820
SBS	Chr8	26738259	A-C	HET	INTERGENIC
SBS	Chr9	6092927	A-G	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2641539	2641589	50	LOC_Os02g05470
Deletion	Chr8	4249145	4249147	2
Deletion	Chr10	4488955	4488965	10
Deletion	Chr6	4645457	4645463	6
Deletion	Chr1	4657342	4657344	2
Deletion	Chr1	4878534	4878539	5
Deletion	Chr3	5714918	5714919	1	LOC_Os03g11110
Deletion	Chr9	6498562	6498564	2	LOC_Os09g11640
Deletion	Chr10	8821758	8821767	9
Deletion	Chr4	8917566	8917571	5
Deletion	Chr12	12345386	12345400	14	LOC_Os12g21920
Deletion	Chr3	16568831	16568835	4
Deletion	Chr3	16710204	16710211	7
Deletion	Chr12	17634695	17634697	2
Deletion	Chr8	17986504	17986522	18
Deletion	Chr3	18065264	18065275	11
Deletion	Chr9	19464858	19464872	14
Deletion	Chr8	19944937	19944942	5
Deletion	Chr4	20398277	20398278	1	LOC_Os04g33690
Deletion	Chr7	20810998	20810999	1
Deletion	Chr6	23179879	23179890	11
Deletion	Chr5	25154711	25154725	14
Deletion	Chr5	26693218	26693220	2
Deletion	Chr3	33002893	33002904	11	LOC_Os03g57940
Deletion	Chr3	36070555	36070556	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	4876397	4876399	3
Insertion	Chr10	13910572	13910572	1
Insertion	Chr4	3952441	3952445	5
Insertion	Chr5	27925865	27925866	2
Insertion	Chr5	6003109	6003110	2
Insertion	Chr7	10920496	10920497	2
Insertion	Chr7	23386232	23386233	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	918002	2717377	LOC_Os01g02690
Inversion	Chr1	918014	2717385	LOC_Os01g02690

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	6366367	Chr4	16083641	2
Translocation	Chr11	6675672	Chr5	19243485	LOC_Os11g12000
Translocation	Chr8	10754437	Chr6	19260574	LOC_Os08g17580
Translocation	Chr4	16578611	Chr1	36180932	LOC_Os04g28074
Translocation	Chr11	23382761	Chr5	16792647	LOC_Os11g39270
Translocation	Chr11	23382764	Chr5	16789341	LOC_Os11g39270

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