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Mutant Information

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4638804	G-T	HOMO	INTERGENIC
SBS	Chr10	2089870	T-A	HOMO	INTRON
SBS	Chr11	17138345	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g29530
SBS	Chr2	28053021	C-T	HET	INTERGENIC
SBS	Chr2	294985	A-T	HOMO	INTERGENIC
SBS	Chr3	7254207	T-A	HOMO	INTERGENIC
SBS	Chr3	7254208	G-A	HOMO	INTERGENIC
SBS	Chr3	7254209	C-A	HOMO	INTERGENIC
SBS	Chr4	26622440	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g45010
SBS	Chr4	26622441	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g45010
SBS	Chr4	28961860	A-G	HET	INTERGENIC
SBS	Chr4	30352987	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51230
SBS	Chr4	5751381	C-A	HET	INTERGENIC
SBS	Chr4	9537826	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	27485541	T-C	HET	INTERGENIC
SBS	Chr9	21424037	G-A	HOMO	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1634589	1634605	16	LOC_Os04g03700
Deletion	Chr8	2897001	2975000	78000	12
Deletion	Chr4	8175548	8175550	2
Deletion	Chr9	10237741	10237760	19
Deletion	Chr12	10300079	10300089	10
Deletion	Chr4	12518169	12518170	1
Deletion	Chr11	12955564	12955572	8	LOC_Os11g22540
Deletion	Chr11	13102133	13102134	1
Deletion	Chr8	15578125	15578136	11	LOC_Os08g25600
Deletion	Chr8	15721224	15721235	11
Deletion	Chr1	15748161	15748163	2
Deletion	Chr3	16115877	16115889	12
Deletion	Chr1	17462318	17462336	18	LOC_Os01g31870
Deletion	Chr10	17642239	17642243	4
Deletion	Chr7	20985242	20985253	11	LOC_Os07g35030
Deletion	Chr4	24070943	24070950	7
Deletion	Chr12	25163030	25163031	1
Deletion	Chr5	28561417	28561424	7
Deletion	Chr1	31632888	31633754	866
Deletion	Chr1	34234496	34234508	12
Deletion	Chr3	35379281	35379282	1

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	26259092	26259093	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3135622	3147811
Inversion	Chr8	21266245	21933190
Inversion	Chr8	21920712	21933186	LOC_Os08g34850
Inversion	Chr1	38843761	39458276	LOC_Os01g66890

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	23412314	Chr1	36164414	LOC_Os08g37040

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