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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20833777	C-T	HOMO	INTRON
SBS	Chr1	9262940	C-A	HET	INTRON
SBS	Chr1	9262941	T-A	HET	INTRON
SBS	Chr11	15096452	C-T	HET	INTERGENIC
SBS	Chr11	23350806	C-T	HET	INTERGENIC
SBS	Chr11	27472287	G-T	HET	INTRON
SBS	Chr11	4615621	G-A	HET	INTRON
SBS	Chr12	11939541	C-T	HET	INTERGENIC
SBS	Chr2	29576715	A-G	HET	INTERGENIC
SBS	Chr2	7481484	A-C	HET	INTERGENIC
SBS	Chr3	25123008	T-C	HET	INTRON
SBS	Chr3	30803216	A-T	HET	INTERGENIC
SBS	Chr3	4767502	T-A	HET	INTERGENIC
SBS	Chr4	10002490	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	10831427	G-A	HET	INTERGENIC
SBS	Chr4	30312438	C-T	HET	INTRON
SBS	Chr5	21726087	A-C	HOMO	INTERGENIC
SBS	Chr5	21832939	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	19621608	C-T	HET	UTR_5_PRIME
SBS	Chr6	8500237	C-A	HET	INTERGENIC
SBS	Chr7	2895261	C-T	HET	INTERGENIC
SBS	Chr8	1666875	C-A	HOMO	INTERGENIC
SBS	Chr9	5794769	C-G	HET	INTERGENIC
SBS	Chr9	6412602	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11490
SBS	Chr9	8792893	A-T	HET	INTRON

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	4314951	4314952	1
Deletion	Chr10	5986169	5986174	5	LOC_Os10g10820
Deletion	Chr10	8557347	8557360	13
Deletion	Chr8	12153983	12153991	8	LOC_Os08g20250
Deletion	Chr12	12552189	12552199	10
Deletion	Chr3	19965119	19965120	1
Deletion	Chr5	21355466	21355473	7	LOC_Os05g36060
Deletion	Chr5	21751844	21753734	1890	LOC_Os05g37200
Deletion	Chr6	22368777	22368785	8
Deletion	Chr12	24289218	24289754	536
Deletion	Chr12	26758668	26758669	1
Deletion	Chr5	29106134	29106158	24
Deletion	Chr3	30356303	30356319	16	LOC_Os03g52920

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	8668380	8668380	1
Insertion	Chr3	6819358	6819358	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	24595656	27160818	2
Inversion	Chr7	27567171	27614961

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	10125420	Chr5	21751846	LOC_Os05g37200
Translocation	Chr12	13386893	Chr10	15370823	LOC_Os10g29570
Translocation	Chr12	13842072	Chr10	21240798
Translocation	Chr6	14530188	Chr5	9756564	2
Translocation	Chr6	14530193	Chr5	9753121	LOC_Os06g24730
Translocation	Chr7	24595658	Chr3	11388745	LOC_Os07g41090
Translocation	Chr7	27873731	Chr6	5287354	LOC_Os07g46640

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