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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14144613	G-C	HOMO	INTERGENIC
SBS	Chr1	26653661	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g46760
SBS	Chr1	29344350	G-C	HET	INTERGENIC
SBS	Chr1	29542577	G-A	HET	INTERGENIC
SBS	Chr1	31693091	C-T	HET	INTERGENIC
SBS	Chr1	9208525	G-A	HOMO	INTRON
SBS	Chr10	5596398	G-C	HOMO	INTRON
SBS	Chr11	10700303	A-G	HET	INTERGENIC
SBS	Chr12	10946166	T-A	HET	INTERGENIC
SBS	Chr12	10946170	C-A	HET	INTERGENIC
SBS	Chr12	19798007	C-A	HET	INTERGENIC
SBS	Chr12	24070116	T-C	HOMO	INTERGENIC
SBS	Chr12	27352360	T-A	HET	INTERGENIC
SBS	Chr12	5314326	C-T	HET	INTRON
SBS	Chr2	23358219	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	30940333	C-T	HET	INTERGENIC
SBS	Chr2	6579241	T-C	HOMO	INTRON
SBS	Chr3	20361761	G-A	HOMO	INTRON
SBS	Chr3	2408287	G-T	HET	INTERGENIC
SBS	Chr3	27449934	A-G	HOMO	INTERGENIC
SBS	Chr3	28501288	G-A	HET	INTRON
SBS	Chr3	32893619	G-C	HOMO	INTERGENIC
SBS	Chr4	11508807	G-A	HET	INTERGENIC
SBS	Chr5	121014	G-A	HOMO	INTERGENIC
SBS	Chr5	121015	T-A	HOMO	INTERGENIC
SBS	Chr6	15124154	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25880
SBS	Chr6	2305078	C-A	HOMO	INTERGENIC
SBS	Chr6	9215675	T-G	HET	INTERGENIC
SBS	Chr7	13381445	G-C	HET	INTERGENIC
SBS	Chr9	1080228	T-G	HET	INTERGENIC
SBS	Chr9	17515845	A-C	HET	INTRON
SBS	Chr9	4107808	C-G	HET	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1100001	1209000	109000	19
Deletion	Chr10	5373632	5373633	1
Deletion	Chr5	9451758	9463782	12024	3
Deletion	Chr10	10468566	10468567	1
Deletion	Chr4	13018704	13018706	2	LOC_Os04g22940
Deletion	Chr6	17345449	17345451	2
Deletion	Chr9	21412541	21412545	4
Deletion	Chr1	22690945	22690951	6
Deletion	Chr8	23806797	23806813	16
Deletion	Chr11	23955715	23955722	7
Deletion	Chr12	24821837	24821845	8
Deletion	Chr4	25660113	25660118	5
Deletion	Chr1	36262307	36262318	11

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	31904143	31904143	1
Insertion	Chr1	34064088	34064089	2
Insertion	Chr5	120991	120991	1
Insertion	Chr5	120997	120997	1
Insertion	Chr6	21372446	21372451	6	LOC_Os06g36390
Insertion	Chr8	23241390	23241390	1

No Inversion

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1209093	Chr3	2899990	LOC_Os03g05800
Translocation	Chr11	1232019	Chr2	2141056	LOC_Os02g04720
Translocation	Chr6	4196609	Chr1	11494123
Translocation	Chr12	10303013	Chr8	16939225	LOC_Os12g17930
Translocation	Chr8	16939220	Chr6	23546675	LOC_Os06g39640
Translocation	Chr12	18685538	Chr8	16922567
Translocation	Chr11	27264197	Chr9	12172764	LOC_Os09g20284

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