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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22601855	G-A	HET	INTERGENIC
SBS	Chr1	38972098	C-T	HET	INTERGENIC
SBS	Chr1	875469	G-C	HET	INTERGENIC
SBS	Chr11	21094393	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g35920
SBS	Chr12	24376659	C-T	HOMO	INTERGENIC
SBS	Chr2	10093655	A-G	HET	INTRON
SBS	Chr2	22272008	G-A	HET	INTERGENIC
SBS	Chr2	31039577	T-A	HET	UTR_3_PRIME
SBS	Chr3	10120998	G-C	HET	INTRON
SBS	Chr3	18347633	A-T	HET	INTERGENIC
SBS	Chr3	25604449	A-T	HOMO	INTERGENIC
SBS	Chr3	6447817	G-T	HOMO	INTERGENIC
SBS	Chr4	11264720	A-G	HET	UTR_3_PRIME
SBS	Chr4	13121023	G-A	HET	INTERGENIC
SBS	Chr4	320713	A-G	HET	INTERGENIC
SBS	Chr5	3477989	C-G	HET	INTRON
SBS	Chr5	6114894	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g10950
SBS	Chr5	6991162	G-T	HET	INTERGENIC
SBS	Chr6	13509665	T-G	HOMO	INTERGENIC
SBS	Chr6	27586620	T-C	HOMO	INTRON
SBS	Chr7	2009424	G-A	HET	INTRON
SBS	Chr7	2009425	G-A	HET	INTRON
SBS	Chr7	2009430	G-A	HET	INTRON
SBS	Chr7	7704975	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	14189281	C-T	HET	INTRON
SBS	Chr8	9453021	C-T	HET	INTERGENIC
SBS	Chr9	6114503	T-A	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1093434	1093444	10
Deletion	Chr7	1174489	1174492	3
Deletion	Chr2	1390356	1390368	12	LOC_Os02g03410
Deletion	Chr7	2112415	2112424	9
Deletion	Chr10	2233534	2233565	31
Deletion	Chr12	8244381	8244386	5	LOC_Os12g14450
Deletion	Chr2	12795001	12855000	60000	9
Deletion	Chr9	16463901	16463904	3	LOC_Os09g27060
Deletion	Chr4	17102396	17102397	1
Deletion	Chr3	19003397	19003406	9	LOC_Os03g33230
Deletion	Chr8	19038826	19038827	1
Deletion	Chr12	20827807	20827827	20
Deletion	Chr7	20947921	21098724	150803	26
Deletion	Chr7	22200083	22200123	40
Deletion	Chr12	22572177	22572179	2
Deletion	Chr4	24447467	24447476	9
Deletion	Chr8	26514652	26514653	1
Deletion	Chr1	27062338	27062348	10
Deletion	Chr7	28569104	28569110	6
Deletion	Chr2	29105447	29105459	12

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	12659877	12659878	2
Insertion	Chr11	24387881	24387889	9	LOC_Os11g40780
Insertion	Chr11	7087730	7087731	2
Insertion	Chr2	28381430	28381430	1
Insertion	Chr5	28034317	28034317	1
Insertion	Chr6	27094509	27094510	2
Insertion	Chr6	9031431	9031431	1
Insertion	Chr7	26267327	26267328	2
Insertion	Chr9	11591126	11591132	7

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2279089	Chr2	16298698	LOC_Os10g04750
Translocation	Chr7	13356993	Chr1	26736427
Translocation	Chr7	21095124	Chr1	30378314	LOC_Os01g52800
Translocation	Chr7	21098723	Chr1	30378271	LOC_Os01g52800
Translocation	Chr6	22514370	Chr4	3026600	2

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