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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6357510	T-C	HET	INTRON
SBS	Chr1	13470817	A-C	HOMO	INTERGENIC
SBS	Chr2	31961111	G-A	HOMO	UTR_5_PRIME
SBS	Chr3	5418752	C-T	HOMO	INTRON
SBS	Chr3	5418756	A-T	HOMO	INTRON
SBS	Chr3	20200402	G-A	HOMO	INTERGENIC
SBS	Chr3	23116168	T-C	HET	INTERGENIC
SBS	Chr3	23919645	C-T	HET	INTERGENIC
SBS	Chr3	26456284	T-A	HET	INTERGENIC
SBS	Chr4	24822094	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	27415322	C-T	HET	INTERGENIC
SBS	Chr5	10277337	C-G	HET	INTERGENIC
SBS	Chr5	25617525	T-A	HET	INTRON
SBS	Chr6	30083379	C-T	HET	INTERGENIC
SBS	Chr7	9520781	T-A	HET	INTERGENIC
SBS	Chr8	2659571	G-C	HET	INTRON
SBS	Chr8	10865427	T-G	HET	INTERGENIC
SBS	Chr9	3188192	A-G	HOMO	INTERGENIC
SBS	Chr10	5195541	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g09610
SBS	Chr10	9458357	G-A	HET	STOP_GAINED	LOC_Os10g18650
SBS	Chr11	24764527	G-A	HET	INTERGENIC
SBS	Chr12	14840859	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g25640

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2438098	2438110	12
Deletion	Chr2	2836141	2836144	3
Deletion	Chr8	3264405	3264415	10
Deletion	Chr5	4045762	4045796	34	LOC_Os05g07560
Deletion	Chr1	5205664	5205675	11
Deletion	Chr5	5696001	6012000	316000	39
Deletion	Chr7	9043543	9043554	11
Deletion	Chr9	12095214	12095239	25
Deletion	Chr1	13276813	13276819	6
Deletion	Chr10	13307042	13307047	5	LOC_Os10g25690
Deletion	Chr12	13395832	13395844	12
Deletion	Chr6	13675523	13675529	6	LOC_Os06g23420
Deletion	Chr12	16669809	16669819	10	LOC_Os12g28220
Deletion	Chr1	16774778	16774785	7
Deletion	Chr1	18847142	18847143	1
Deletion	Chr8	19554673	19554692	19
Deletion	Chr4	21341574	21341591	17
Deletion	Chr7	23011696	23011700	4
Deletion	Chr7	23649002	23649003	1
Deletion	Chr3	24868445	24868447	2
Deletion	Chr1	25891509	25891510	1	LOC_Os01g45580
Deletion	Chr6	26794333	26794341	8
Deletion	Chr3	31019325	31019344	19
Deletion	Chr3	34876703	34876704	1
Deletion	Chr1	35964432	35964433	1	LOC_Os01g62120
Deletion	Chr1	39986806	39986809	3

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	4177143	4177144	2
Insertion	Chr11	10976473	10976474	2
Insertion	Chr1	27335697	27335697	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	16268256	16324386
Inversion	Chr3	16268273	16324400
Inversion	Chr9	19551878	19708467	LOC_Os09g32770

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	5587013	Chr3	31169955
Translocation	Chr6	11605844	Chr5	6870535

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