Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect
SBS	Chr1	19854744	C-T	HET	INTERGENIC
SBS	Chr1	19854745	G-T	HET	INTERGENIC
SBS	Chr1	9793163	C-T	HET	INTERGENIC
SBS	Chr1	9793164	C-T	HET	INTERGENIC
SBS	Chr10	14447756	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	3089623	G-A	HET	INTERGENIC
SBS	Chr11	18138096	G-A	HOMO	INTERGENIC
SBS	Chr2	534509	G-A	HET	INTERGENIC
SBS	Chr4	29758733	A-G	HOMO	INTRON
SBS	Chr5	28208981	A-G	HET	INTERGENIC
SBS	Chr6	14186548	A-T	HOMO	INTERGENIC
SBS	Chr6	14186549	C-T	HOMO	INTERGENIC
SBS	Chr7	14130135	T-A	HET	INTRON
SBS	Chr7	14130139	T-A	HET	INTRON
SBS	Chr7	19907160	T-C	HET	SYNONYMOUS_CODING
SBS	Chr7	25515849	G-T	HET	INTERGENIC
SBS	Chr8	16150634	A-C	HOMO	INTRON
SBS	Chr8	1928271	C-T	HET	INTERGENIC
SBS	Chr9	15984293	A-G	HET	INTERGENIC
SBS	Chr9	22743705	C-A	HET	INTERGENIC
SBS	Chr9	22743706	C-A	HET	INTERGENIC
SBS	Chr9	2555281	A-T	HOMO	INTERGENIC
SBS	Chr9	4374654	A-T	HOMO	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1019123	1019140	17
Deletion	Chr1	1236065	1236067	2	LOC_Os01g03160
Deletion	Chr12	1900812	1900825	13
Deletion	Chr11	2714136	2714159	23
Deletion	Chr10	3682652	3682654	2
Deletion	Chr9	4587819	4587829	10
Deletion	Chr10	7552001	7839000	287000	52
Deletion	Chr11	11003417	11003418	1
Deletion	Chr10	11146075	11146076	1
Deletion	Chr9	12197331	12228705	31374	5
Deletion	Chr12	13081845	13081846	1
Deletion	Chr7	16927068	16927070	2
Deletion	Chr4	18473492	18473507	15	LOC_Os04g30910
Deletion	Chr5	18717958	18717959	1
Deletion	Chr5	19327105	19327160	55
Deletion	Chr4	19482916	19482929	13
Deletion	Chr7	19776040	19776044	4
Deletion	Chr7	20900447	20900472	25	LOC_Os07g34870
Deletion	Chr1	22546781	22546789	8
Deletion	Chr3	23936800	23936805	5
Deletion	Chr7	24981485	24981490	5
Deletion	Chr1	27140825	27140826	1
Deletion	Chr6	30187816	30187828	12	LOC_Os06g49870
Deletion	Chr3	30466715	30466731	16
Deletion	Chr3	30563128	30575975	12847	2
Deletion	Chr2	30741416	30741417	1
Deletion	Chr3	33248704	33250376	1672

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2564497	2564499	3
Insertion	Chr2	7569783	7569783	1
Insertion	Chr3	25215573	25215576	4
Insertion	Chr3	27474970	27474970	1
Insertion	Chr6	22140214	22140215	2
Insertion	Chr8	13657406	13657407	2
Insertion	Chr8	27181136	27181136	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	10744493	11173317	LOC_Os05g19240
Inversion	Chr1	34939120	35082171	2
Inversion	Chr1	34939145	35082184	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	7101208	Chr3	13835923
Translocation	Chr10	8759695	Chr7	14018401	2
Translocation	Chr2	27916168	Chr1	42488020
Translocation	Chr7	29591543	Chr5	128295	LOC_Os07g49410
Translocation	Chr7	29591569	Chr5	128759	LOC_Os07g49410

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr5	27780520	27794801	14281	5

Main menu