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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29153213	T-C	HET	INTRON
SBS	Chr10	13475251	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g26030
SBS	Chr10	18489918	A-G	HET	INTRON
SBS	Chr11	18575961	A-C	HET	INTERGENIC
SBS	Chr11	19580986	A-T	HET	INTRON
SBS	Chr11	3424486	C-T	HET	INTERGENIC
SBS	Chr11	8400291	T-C	HET	INTERGENIC
SBS	Chr12	1139859	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g03040
SBS	Chr12	8986936	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g15730
SBS	Chr3	10303803	A-C	HET	INTRON
SBS	Chr4	34215226	G-T	HOMO	INTERGENIC
SBS	Chr5	15371667	G-A	HOMO	INTERGENIC
SBS	Chr5	15834877	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g27230
SBS	Chr5	7352366	G-A	HET	INTERGENIC
SBS	Chr6	10749441	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g18920
SBS	Chr6	13109544	T-C	HOMO	INTRON
SBS	Chr6	21637399	A-T	HOMO	INTERGENIC
SBS	Chr6	7137888	A-T	HET	INTRON
SBS	Chr6	7137889	C-T	HET	INTRON
SBS	Chr7	15272676	G-A	HET	INTERGENIC
SBS	Chr7	18696799	A-T	HET	INTERGENIC
SBS	Chr7	20898811	A-T	HET	INTERGENIC
SBS	Chr8	1424826	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03120
SBS	Chr8	21808354	T-A	HET	INTERGENIC
SBS	Chr9	19092918	T-G	HOMO	INTERGENIC
SBS	Chr9	8093196	C-T	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	401603	401627	24	LOC_Os06g01670
Deletion	Chr10	3062663	3062671	8
Deletion	Chr5	4602009	4602018	9
Deletion	Chr5	7228096	7228099	3
Deletion	Chr7	7472940	7472978	38	LOC_Os07g13020
Deletion	Chr8	8293025	8293031	6
Deletion	Chr8	11803343	11803344	1	LOC_Os08g19710
Deletion	Chr3	13028603	13028604	1
Deletion	Chr6	13284128	13284156	28
Deletion	Chr10	16062194	16062202	8
Deletion	Chr7	16826630	16826635	5
Deletion	Chr7	17044624	17044625	1	LOC_Os07g29090
Deletion	Chr11	17297342	17297350	8
Deletion	Chr7	18591504	18591509	5	LOC_Os07g31380
Deletion	Chr12	20405798	20405802	4
Deletion	Chr6	21642765	21642766	1
Deletion	Chr7	23903698	23903747	49
Deletion	Chr5	24000856	24000864	8	LOC_Os05g40920
Deletion	Chr8	26600895	26600896	1
Deletion	Chr1	27747585	27924709	177124	27
Deletion	Chr4	29470932	29470936	4
Deletion	Chr1	37736546	37736548	2

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	12353499	12353502	4

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	12439388	13306800	LOC_Os03g23030
Inversion	Chr3	13032335	13306755	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	610783	Chr4	4507458	LOC_Os12g02050
Translocation	Chr3	27100728	Chr1	29216410	LOC_Os03g47760
Translocation	Chr3	27102672	Chr1	29216411	LOC_Os03g47760

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