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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4183148	T-C	HET	INTERGENIC
SBS	Chr1	13820276	A-T	HET	INTERGENIC
SBS	Chr1	24117692	T-A	HET	INTERGENIC
SBS	Chr1	35552720	A-T	HET	INTERGENIC
SBS	Chr1	42057994	A-T	HET	INTERGENIC
SBS	Chr1	42057996	G-T	HET	INTERGENIC
SBS	Chr2	19646849	A-T	HET	INTERGENIC
SBS	Chr3	4467224	C-T	HET	INTERGENIC
SBS	Chr3	6634388	A-T	HET	INTERGENIC
SBS	Chr4	32761336	A-T	HOMO	INTRON
SBS	Chr5	6337852	T-A	HET	INTERGENIC
SBS	Chr5	10150226	G-A	HET	INTERGENIC
SBS	Chr6	14071561	C-T	HOMO	INTERGENIC
SBS	Chr6	16134455	T-A	HOMO	INTRON
SBS	Chr7	15136664	T-C	HET	INTERGENIC
SBS	Chr8	16135072	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g26500
SBS	Chr9	2729076	G-A	HET	INTRON
SBS	Chr9	8498268	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14390
SBS	Chr10	5865055	C-T	HOMO	INTERGENIC
SBS	Chr10	8541339	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17050
SBS	Chr10	14261055	T-A	HET	INTERGENIC
SBS	Chr10	14261058	T-A	HET	INTERGENIC
SBS	Chr10	14428357	G-T	HET	UTR_3_PRIME
SBS	Chr10	14428358	A-T	HET	UTR_3_PRIME
SBS	Chr11	27207284	G-T	HET	INTRON
SBS	Chr12	1638825	A-G	HET	INTRON
SBS	Chr12	3206569	T-G	HET	SYNONYMOUS_CODING
SBS	Chr12	6811448	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	7258958	G-T	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2412433	2412434	1
Deletion	Chr12	5018031	5018032	1
Deletion	Chr12	5748954	5748960	6	LOC_Os12g10710
Deletion	Chr3	5780304	5780335	31
Deletion	Chr5	6301573	6301575	2
Deletion	Chr3	6576476	6576487	11	LOC_Os03g12450
Deletion	Chr5	9236739	9236743	4
Deletion	Chr10	9669691	9669698	7	LOC_Os10g18990
Deletion	Chr2	9776001	9836000	60000	8
Deletion	Chr11	11146119	11146123	4
Deletion	Chr3	13257006	13257021	15	LOC_Os03g22940
Deletion	Chr7	16644081	16644092	11	LOC_Os07g28450
Deletion	Chr5	16711474	16711524	50
Deletion	Chr1	18925737	18925741	4
Deletion	Chr7	19974999	19975000	1
Deletion	Chr11	19983418	19983448	30	LOC_Os11g34120
Deletion	Chr1	23244120	23244125	5
Deletion	Chr2	25926490	25926495	5
Deletion	Chr4	30942994	30943000	6
Deletion	Chr3	33623325	33623338	13
Deletion	Chr1	35028657	35028659	2

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	11243534	11243535	2
Insertion	Chr4	32258978	32259000	23
Insertion	Chr11	871553	871554	2
Insertion	Chr4	5138407	5138408	2	LOC_Os04g09580
Insertion	Chr6	4421592	4421593	2
Insertion	Chr8	16622730	16622731	2
Insertion	Chr4	29865906	29865906	1
Insertion	Chr8	9294792	9294792	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4149633	4454325	LOC_Os06g08450
Inversion	Chr6	4149646	7794476	LOC_Os06g08450

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2321455	Chr4	12931276	LOC_Os09g04384
Translocation	Chr12	5829886	Chr1	11618352	LOC_Os01g20840
Translocation	Chr5	25539360	Chr1	40623957

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