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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1875880	C-T	HET	INTERGENIC
SBS	Chr1	4257028	G-A	HET	SPLICE_SITE_REGION
SBS	Chr1	28215409	G-A	HET	INTERGENIC
SBS	Chr1	35196921	C-T	HET	INTERGENIC
SBS	Chr2	19925029	C-A	HET	INTRON
SBS	Chr2	31045989	A-C	HOMO	INTERGENIC
SBS	Chr3	1517492	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g03510
SBS	Chr3	25068149	G-A	HET	INTERGENIC
SBS	Chr3	26263443	C-T	HOMO	UTR_3_PRIME
SBS	Chr3	28668777	A-G	HOMO	INTERGENIC
SBS	Chr4	1652618	G-T	HET	UTR_5_PRIME
SBS	Chr5	3040861	T-C	HET	INTERGENIC
SBS	Chr5	3730273	A-G	HET	INTERGENIC
SBS	Chr5	19337003	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g32990
SBS	Chr5	22279025	T-G	HET	UTR_3_PRIME
SBS	Chr5	23988208	T-C	HET	INTERGENIC
SBS	Chr6	23794563	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g40000
SBS	Chr7	16703368	C-T	HET	INTERGENIC
SBS	Chr7	16982622	A-T	HET	INTRON
SBS	Chr7	20385175	G-A	HET	INTERGENIC
SBS	Chr8	7234364	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g12290
SBS	Chr8	7234367	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g12290
SBS	Chr8	8611292	T-C	HET	INTERGENIC
SBS	Chr8	10418243	C-T	HET	INTERGENIC
SBS	Chr8	17891112	T-G	HET	INTERGENIC
SBS	Chr10	11060160	G-T	HET	INTERGENIC
SBS	Chr10	12772683	G-A	HET	INTERGENIC
SBS	Chr10	21493676	C-G	HET	INTERGENIC
SBS	Chr10	21988810	T-G	HET	UTR_3_PRIME
SBS	Chr10	22162845	A-C	HET	INTRON
SBS	Chr11	8034011	T-G	HOMO	INTERGENIC
SBS	Chr11	26484849	C-G	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1211001	1222000	11000	2
Deletion	Chr2	3270206	3270208	2
Deletion	Chr1	4733688	4733699	11
Deletion	Chr6	5274923	5274928	5
Deletion	Chr3	5581595	5581605	10
Deletion	Chr7	6462001	6608000	146000	18
Deletion	Chr4	6732238	6732243	5
Deletion	Chr1	6836552	6836562	10
Deletion	Chr11	8670761	8670768	7
Deletion	Chr10	9067102	9067119	17
Deletion	Chr7	9459452	9459453	1
Deletion	Chr10	9807053	9807063	10
Deletion	Chr2	10502022	10502034	12
Deletion	Chr9	11199581	11199589	8
Deletion	Chr12	14070885	14070961	76
Deletion	Chr1	15053182	15053189	7
Deletion	Chr10	22157974	22157987	13
Deletion	Chr5	22740392	22740396	4
Deletion	Chr7	25871168	25871169	1	LOC_Os07g43160
Deletion	Chr3	26631960	26631974	14
Deletion	Chr7	26853200	26853428	228	LOC_Os07g45010
Deletion	Chr1	26942454	26942455	1
Deletion	Chr4	29803131	29803136	5	LOC_Os04g49960
Deletion	Chr3	32697514	32699017	1503	LOC_Os03g57320
Deletion	Chr2	34723420	34723469	49
Deletion	Chr1	38078620	38078629	9
Deletion	Chr1	38710834	38710835	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	23494583	23494583	1
Insertion	Chr1	8394429	8394429	1
Insertion	Chr3	11831202	11831202	1
Insertion	Chr5	6390419	6390419	1
Insertion	Chr6	31031263	31031263	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3151027	4515145	LOC_Os07g06490
Inversion	Chr7	29473094	29480690	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	5686038	Chr7	6608181	LOC_Os12g10640
Translocation	Chr12	5686047	Chr7	6613544	2
Translocation	Chr8	10989334	Chr7	12645410	2
Translocation	Chr4	11225421	Chr3	25765575
Translocation	Chr11	26482661	Chr7	20170386
Translocation	Chr11	26485024	Chr7	20170385

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