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Mutant Information |
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Mutant Name | FN545-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN545-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 29
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 1860854 | C-T | HET | INTERGENIC | |
SBS | Chr1 | 24995083 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g43630 |
SBS | Chr10 | 6133881 | C-T | HET | INTERGENIC | |
SBS | Chr10 | 6990992 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g12560 |
SBS | Chr11 | 11487792 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g19960 |
SBS | Chr11 | 13331024 | G-A | HOMO | INTERGENIC | |
SBS | Chr11 | 16834983 | A-C | HOMO | INTERGENIC | |
SBS | Chr11 | 18014611 | G-A | HOMO | INTRON | |
SBS | Chr12 | 25146003 | A-T | HOMO | INTRON | |
SBS | Chr12 | 4961825 | A-T | HOMO | INTERGENIC | |
SBS | Chr2 | 20212545 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr3 | 13550219 | G-A | HOMO | INTERGENIC | |
SBS | Chr3 | 24739741 | A-G | HOMO | INTERGENIC | |
SBS | Chr3 | 27485544 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 30429 | C-T | HOMO | INTERGENIC | |
SBS | Chr4 | 6712162 | C-T | HOMO | INTERGENIC | |
SBS | Chr5 | 14644534 | C-T | HOMO | INTERGENIC | |
SBS | Chr6 | 12478673 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 14712786 | T-A | HET | INTERGENIC | |
SBS | Chr6 | 17192246 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g29830 |
SBS | Chr6 | 27882475 | G-A | HOMO | INTERGENIC | |
SBS | Chr7 | 15119441 | T-C | HET | INTERGENIC | |
SBS | Chr7 | 15119443 | A-C | HET | INTERGENIC | |
SBS | Chr8 | 16580381 | T-A | HOMO | INTERGENIC | |
SBS | Chr8 | 18052192 | T-C | HOMO | INTERGENIC | |
SBS | Chr8 | 18710074 | G-A | HOMO | INTERGENIC | |
SBS | Chr8 | 20994479 | T-A | HET | INTERGENIC | |
SBS | Chr8 | 22701182 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 6097224 | C-A | HOMO | INTERGENIC |
Deletions: 30
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr1 | 1210086 | 1210090 | 4 | |
Deletion | Chr5 | 1286833 | 1286846 | 13 | |
Deletion | Chr12 | 1723203 | 1723204 | 1 | |
Deletion | Chr8 | 2685218 | 2685221 | 3 | |
Deletion | Chr6 | 3404817 | 3404820 | 3 | |
Deletion | Chr8 | 3625787 | 3625804 | 17 | |
Deletion | Chr8 | 5260001 | 5260002 | 1 | |
Deletion | Chr10 | 5970001 | 6006000 | 36000 | 6 |
Deletion | Chr1 | 6255179 | 6255188 | 9 | |
Deletion | Chr1 | 6323559 | 6323565 | 6 | |
Deletion | Chr6 | 6518304 | 6518305 | 1 | LOC_Os06g12170 |
Deletion | Chr12 | 9531411 | 9531412 | 1 | |
Deletion | Chr7 | 11282613 | 11282615 | 2 | |
Deletion | Chr7 | 11426187 | 11426192 | 5 | |
Deletion | Chr1 | 14221693 | 14221718 | 25 | |
Deletion | Chr5 | 18513755 | 18513776 | 21 | |
Deletion | Chr10 | 19424409 | 19424410 | 1 | |
Deletion | Chr11 | 20426301 | 20426305 | 4 | LOC_Os11g34860 |
Deletion | Chr10 | 21399218 | 21399219 | 1 | |
Deletion | Chr8 | 22621847 | 22621848 | 1 | |
Deletion | Chr2 | 23186050 | 23186056 | 6 | |
Deletion | Chr2 | 23766329 | 23766332 | 3 | |
Deletion | Chr8 | 24757173 | 24757175 | 2 | |
Deletion | Chr12 | 25966030 | 25966031 | 1 | |
Deletion | Chr11 | 26452312 | 26452323 | 11 | |
Deletion | Chr1 | 28795702 | 28795703 | 1 | |
Deletion | Chr7 | 29077045 | 29077046 | 1 | |
Deletion | Chr3 | 29485502 | 29485505 | 3 | |
Deletion | Chr3 | 30704888 | 30705133 | 245 | |
Deletion | Chr4 | 32042699 | 32042703 | 4 |
Insertions: 5
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr12 | 17680273 | 17680273 | 1 | |
Insertion | Chr2 | 24964446 | 24964446 | 1 | |
Insertion | Chr3 | 22281753 | 22281768 | 16 | LOC_Os03g40100![]() |
Insertion | Chr7 | 20519776 | 20519776 | 1 | |
Insertion | Chr8 | 24146003 | 24146004 | 2 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 1991723 | 2192098 | |
Inversion | Chr8 | 2192123 | 3507947 | |
Inversion | Chr10 | 6360059 | 7126221 | LOC_Os10g12760 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 1991821 | Chr1 | 9936250 | |
Translocation | Chr8 | 1991822 | Chr1 | 9936251 | |
Translocation | Chr10 | 13428271 | Chr8 | 19392274 | 2 |
Translocation | Chr3 | 23252566 | Chr2 | 9805446 |