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Mutant Information

Mutant NameFN545-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN545-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 29
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr11860854C-THETINTERGENIC
SBSChr124995083G-CHOMONON_SYNONYMOUS_CODINGLOC_Os01g43630
SBSChr106133881C-THETINTERGENIC
SBSChr106990992C-AHOMONON_SYNONYMOUS_CODINGLOC_Os10g12560
SBSChr1111487792A-GHOMONON_SYNONYMOUS_CODINGLOC_Os11g19960
SBSChr1113331024G-AHOMOINTERGENIC
SBSChr1116834983A-CHOMOINTERGENIC
SBSChr1118014611G-AHOMOINTRON
SBSChr1225146003A-THOMOINTRON
SBSChr124961825A-THOMOINTERGENIC
SBSChr220212545G-AHETSYNONYMOUS_CODING
SBSChr313550219G-AHOMOINTERGENIC
SBSChr324739741A-GHOMOINTERGENIC
SBSChr327485544A-GHETINTERGENIC
SBSChr430429C-THOMOINTERGENIC
SBSChr46712162C-THOMOINTERGENIC
SBSChr514644534C-THOMOINTERGENIC
SBSChr612478673G-AHETINTERGENIC
SBSChr614712786T-AHETINTERGENIC
SBSChr617192246C-AHETNON_SYNONYMOUS_CODINGLOC_Os06g29830
SBSChr627882475G-AHOMOINTERGENIC
SBSChr715119441T-CHETINTERGENIC
SBSChr715119443A-CHETINTERGENIC
SBSChr816580381T-AHOMOINTERGENIC
SBSChr818052192T-CHOMOINTERGENIC
SBSChr818710074G-AHOMOINTERGENIC
SBSChr820994479T-AHETINTERGENIC
SBSChr822701182G-AHETINTERGENIC
SBSChr86097224C-AHOMOINTERGENIC

Deletions: 30
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr1121008612100904
DeletionChr51286833128684613
DeletionChr12172320317232041
DeletionChr8268521826852213
DeletionChr6340481734048203
DeletionChr83625787362580417
DeletionChr8526000152600021
DeletionChr1059700016006000360006
DeletionChr1625517962551889
DeletionChr1632355963235656
DeletionChr6651830465183051LOC_Os06g12170
DeletionChr12953141195314121
DeletionChr711282613112826152
DeletionChr711426187114261925
DeletionChr1142216931422171825
DeletionChr5185137551851377621
DeletionChr1019424409194244101
DeletionChr1120426301204263054LOC_Os11g34860
DeletionChr1021399218213992191
DeletionChr822621847226218481
DeletionChr223186050231860566
DeletionChr223766329237663323
DeletionChr824757173247571752
DeletionChr1225966030259660311
DeletionChr11264523122645232311
DeletionChr128795702287957031
DeletionChr729077045290770461
DeletionChr329485502294855053
DeletionChr33070488830705133245
DeletionChr432042699320427034

Insertions: 5
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1217680273176802731
InsertionChr224964446249644461
InsertionChr3222817532228176816LOC_Os03g40100image
InsertionChr720519776205197761
InsertionChr824146003241460042

Inversions: 3
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr819917232192098
InversionChr821921233507947
InversionChr1063600597126221LOC_Os10g12760

Translocations: 4
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr81991821Chr19936250
TranslocationChr81991822Chr19936251
TranslocationChr1013428271Chr8193922742
TranslocationChr323252566Chr29805446