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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16112739	A-G	HOMO	INTERGENIC
SBS	Chr1	1792318	A-T	HET	INTERGENIC
SBS	Chr1	31390654	T-A	HET	INTERGENIC
SBS	Chr1	37282772	A-G	HET	INTRON
SBS	Chr1	42324700	G-A	HET	INTERGENIC
SBS	Chr1	42324701	T-A	HET	INTERGENIC
SBS	Chr1	9527394	A-T	HET	INTERGENIC
SBS	Chr10	18973769	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g35450
SBS	Chr11	13367542	C-T	HOMO	INTERGENIC
SBS	Chr11	16971935	G-A	HOMO	INTRON
SBS	Chr12	20802048	T-A	HOMO	SPLICE_SITE_REGION
SBS	Chr12	26825818	A-T	HET	INTRON
SBS	Chr12	4610690	T-A	HET	INTERGENIC
SBS	Chr2	23662535	G-A	HET	INTERGENIC
SBS	Chr2	27673156	T-A	HET	INTERGENIC
SBS	Chr2	27673157	C-A	HET	INTERGENIC
SBS	Chr3	25219144	T-C	HOMO	INTERGENIC
SBS	Chr3	30413631	C-T	HET	INTERGENIC
SBS	Chr3	31658116	C-T	HET	UTR_3_PRIME
SBS	Chr4	23338071	G-T	HOMO	INTERGENIC
SBS	Chr4	9756003	G-A	HOMO	INTERGENIC
SBS	Chr5	19521221	G-C	HET	INTERGENIC
SBS	Chr6	13571314	T-C	HET	INTERGENIC
SBS	Chr6	13571317	A-T	HET	INTERGENIC
SBS	Chr6	22417130	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	2581039	A-T	HOMO	INTRON
SBS	Chr7	6509764	C-A	HOMO	INTERGENIC
SBS	Chr8	11275142	C-G	HET	UTR_3_PRIME
SBS	Chr8	2596687	C-T	HET	INTERGENIC
SBS	Chr8	3082543	C-A	HET	INTRON
SBS	Chr9	12775471	C-A	HOMO	INTERGENIC
SBS	Chr9	4288697	C-T	HET	INTERGENIC
SBS	Chr9	5709940	A-G	HET	SYNONYMOUS_CODING

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	134001	178000	44000	8
Deletion	Chr9	240001	304000	64000	9
Deletion	Chr5	2176412	2176413	1
Deletion	Chr4	2723994	2723995	1
Deletion	Chr10	4772011	4772012	1	LOC_Os10g08820
Deletion	Chr3	4928481	4928482	1
Deletion	Chr7	6515583	6515609	26
Deletion	Chr5	7168146	7168156	10	LOC_Os05g12474
Deletion	Chr6	7592393	7592404	11
Deletion	Chr4	9245596	9245603	7
Deletion	Chr6	12260373	12260374	1
Deletion	Chr5	12427154	12427177	23
Deletion	Chr3	12899712	12899713	1
Deletion	Chr12	12935001	12952000	17000	2
Deletion	Chr8	13118120	13118121	1
Deletion	Chr3	19057186	19057199	13	LOC_Os03g33319
Deletion	Chr7	19385936	19385944	8	LOC_Os07g32530
Deletion	Chr1	20080667	20080671	4
Deletion	Chr2	20858611	20858617	6	LOC_Os02g34790
Deletion	Chr8	21045493	21045505	12	LOC_Os08g33700
Deletion	Chr3	22840332	22840334	2
Deletion	Chr1	24013203	24013205	2
Deletion	Chr1	24279828	24279897	69	LOC_Os01g42690
Deletion	Chr2	25212323	25212327	4
Deletion	Chr2	26238371	26238374	3
Deletion	Chr7	28552348	28552349	1
Deletion	Chr1	28942355	28942365	10
Deletion	Chr2	29281482	29281492	10	LOC_Os02g47860

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	33477026	33477031	6
Insertion	Chr3	33021233	33021244	12
Insertion	Chr4	9608527	9608527	1
Insertion	Chr4	9608538	9608538	1
Insertion	Chr7	3517304	3517305	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	420047	617582	LOC_Os01g01790
Inversion	Chr9	436035	3487949	LOC_Os09g07140
Inversion	Chr9	436209	3487946	LOC_Os09g07140
Inversion	Chr1	1681132	5533479	LOC_Os01g10460

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1863445	Chr1	26061941	2
Translocation	Chr3	11169112	Chr2	34742296
Translocation	Chr10	15993807	Chr8	16179600	LOC_Os08g26580
Translocation	Chr5	20725553	Chr2	5558257	LOC_Os05g34880
Translocation	Chr7	24230191	Chr4	18481655

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