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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14616677	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g25810
SBS	Chr1	39871259	T-G	HOMO	INTERGENIC
SBS	Chr1	41703364	C-T	HOMO	INTERGENIC
SBS	Chr11	22480012	T-C	HET	INTERGENIC
SBS	Chr12	15082523	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr12	5459543	A-T	HOMO	INTERGENIC
SBS	Chr2	30630502	G-A	HET	INTERGENIC
SBS	Chr2	35636762	T-A	HET	UTR_5_PRIME
SBS	Chr3	28226715	G-C	HET	INTERGENIC
SBS	Chr3	6571185	G-A	HET	INTERGENIC
SBS	Chr3	9878831	T-A	HET	SPLICE_SITE_REGION
SBS	Chr4	11754923	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	12894164	C-T	HET	INTERGENIC
SBS	Chr4	3381858	G-A	HET	INTERGENIC
SBS	Chr5	13338073	G-A	HOMO	INTERGENIC
SBS	Chr5	3179188	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g06250
SBS	Chr5	7051921	C-G	HOMO	INTERGENIC
SBS	Chr6	23633356	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g39780
SBS	Chr6	28239879	A-G	HET	INTERGENIC
SBS	Chr6	6460489	G-C	HOMO	INTERGENIC
SBS	Chr6	7890957	G-A	HOMO	INTERGENIC
SBS	Chr6	8621747	T-C	HOMO	INTERGENIC
SBS	Chr7	22242672	C-T	HET	INTERGENIC
SBS	Chr9	4337393	G-C	HET	INTERGENIC
SBS	Chr9	4621560	A-G	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	168815	168834	19
Deletion	Chr9	2234368	2234373	5	LOC_Os09g04230
Deletion	Chr9	4281980	4281994	14
Deletion	Chr10	4687820	4687827	7
Deletion	Chr5	5645792	5645809	17	LOC_Os05g10340
Deletion	Chr6	5701568	5701571	3
Deletion	Chr11	6037372	6037375	3
Deletion	Chr6	8032565	8032566	1
Deletion	Chr4	8103199	8103213	14
Deletion	Chr5	8229130	8229131	1
Deletion	Chr9	8828779	8828803	24
Deletion	Chr1	8959158	8959166	8
Deletion	Chr12	11276692	11276705	13
Deletion	Chr9	15251492	15251493	1
Deletion	Chr10	15481730	15481736	6
Deletion	Chr2	17707973	17707989	16	LOC_Os02g29760
Deletion	Chr11	18675760	18675761	1
Deletion	Chr11	21856699	21856700	1
Deletion	Chr7	22771432	22771436	4
Deletion	Chr11	23519001	23540000	21000	3
Deletion	Chr6	27672818	27672828	10
Deletion	Chr1	32164234	32164236	2
Deletion	Chr4	34935143	34935144	1
Deletion	Chr2	35903954	35903959	5	LOC_Os02g58770
Deletion	Chr1	36859587	36859591	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	17583617	17583618	2
Insertion	Chr11	24415987	24415998	12
Insertion	Chr2	16468454	16468457	4	LOC_Os02g27810

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	5991154	10008033	LOC_Os09g10910
Inversion	Chr11	23477491	23518897
Inversion	Chr11	23481982	23539609	LOC_Os11g39530

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	7426403	Chr8	1349965
Translocation	Chr12	11176097	Chr8	19066674	LOC_Os12g19280
Translocation	Chr12	11188651	Chr8	19066671	LOC_Os12g19290

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