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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12183854	G-T	HET	INTERGENIC
SBS	Chr1	21079068	C-A	HOMO	INTRON
SBS	Chr10	7209217	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g13350
SBS	Chr10	8537507	G-A	HET	INTERGENIC
SBS	Chr11	15097574	C-T	HET	INTERGENIC
SBS	Chr11	1994874	T-C	HET	UTR_3_PRIME
SBS	Chr11	26742360	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g44250
SBS	Chr11	531821	G-A	HET	INTRON
SBS	Chr12	10844427	G-A	HOMO	INTERGENIC
SBS	Chr2	12586006	G-T	HOMO	INTRON
SBS	Chr2	21774048	T-C	HET	INTERGENIC
SBS	Chr2	26158049	C-T	HET	INTRON
SBS	Chr2	32611230	A-G	HET	INTERGENIC
SBS	Chr2	34273654	G-T	HET	INTERGENIC
SBS	Chr3	22843833	C-A	HOMO	INTERGENIC
SBS	Chr3	24484774	T-C	HET	INTERGENIC
SBS	Chr3	33122697	C-T	HOMO	INTERGENIC
SBS	Chr3	34494219	A-G	HET	UTR_3_PRIME
SBS	Chr4	21405423	C-T	HOMO	INTERGENIC
SBS	Chr4	22157335	G-T	HOMO	UTR_5_PRIME
SBS	Chr4	22157336	A-G	HOMO	UTR_5_PRIME
SBS	Chr4	26826213	A-G	HET	INTERGENIC
SBS	Chr5	10331606	C-A	HOMO	INTERGENIC
SBS	Chr5	28888072	G-T	HOMO	INTERGENIC
SBS	Chr6	10750930	C-G	HET	INTERGENIC
SBS	Chr6	1111946	G-A	HET	INTERGENIC
SBS	Chr6	1720691	A-T	HET	INTERGENIC
SBS	Chr6	20362835	C-T	HOMO	INTERGENIC
SBS	Chr6	30345118	A-T	HOMO	INTERGENIC
SBS	Chr7	10608673	C-T	HOMO	INTERGENIC
SBS	Chr7	16911757	C-A	HET	INTERGENIC
SBS	Chr7	16911759	G-A	HET	INTERGENIC
SBS	Chr7	6126914	C-T	HET	INTRON
SBS	Chr8	13382827	G-A	HOMO	INTRON
SBS	Chr8	7565443	A-T	HOMO	INTERGENIC
SBS	Chr9	19654129	T-C	HET	INTRON
SBS	Chr9	21413479	G-A	HET	INTERGENIC
SBS	Chr9	21413480	T-A	HET	INTERGENIC
SBS	Chr9	2175119	G-A	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	712667	712672	5
Deletion	Chr5	2832735	2854955	22220	4
Deletion	Chr5	2841797	2841802	5
Deletion	Chr12	4242537	4242545	8
Deletion	Chr7	4674375	4674377	2
Deletion	Chr8	7584827	7584859	32
Deletion	Chr4	7678865	7678868	3
Deletion	Chr3	8100707	8100708	1
Deletion	Chr10	10270563	10270569	6
Deletion	Chr4	10898504	10898518	14
Deletion	Chr10	12353720	12353731	11
Deletion	Chr8	13619466	13619474	8	LOC_Os08g22640
Deletion	Chr9	13656824	13656826	2
Deletion	Chr10	15411661	15411672	11
Deletion	Chr5	16770818	16770834	16
Deletion	Chr10	17742013	17742014	1
Deletion	Chr11	19572732	19572737	5	LOC_Os11g33090
Deletion	Chr9	19654147	19654159	12
Deletion	Chr7	20521937	20521949	12
Deletion	Chr6	20688220	20688226	6
Deletion	Chr10	22118620	22118621	1
Deletion	Chr5	22910677	22910678	1	LOC_Os05g39070
Deletion	Chr11	26778509	26780793	2284	LOC_Os11g44310
Deletion	Chr8	26993385	26993391	6
Deletion	Chr11	28609001	28747000	138000	23
Deletion	Chr3	29861579	29861584	5	LOC_Os03g52040
Deletion	Chr4	31409347	31409353	6
Deletion	Chr3	34697085	34697086	1
Deletion	Chr1	36381588	36381589	1	LOC_Os01g62810

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	18036594	18036594	1
Insertion	Chr10	16613193	16613194	2
Insertion	Chr10	2191192	2191194	3
Insertion	Chr5	18832874	18832875	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	28567480	28879501

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1286730	Chr2	15353558	LOC_Os02g26130
Translocation	Chr10	6845856	Chr6	22827467
Translocation	Chr12	13397052	Chr9	16355281

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