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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27300074	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g47720
SBS	Chr1	33039417	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g57160
SBS	Chr2	3012930	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g06040
SBS	Chr3	3059637	C-T	HET	INTERGENIC
SBS	Chr3	18787262	G-C	HET	INTERGENIC
SBS	Chr4	12027749	T-G	HOMO	INTRON
SBS	Chr4	14697302	T-A	HOMO	INTERGENIC
SBS	Chr4	28391803	A-T	HOMO	INTERGENIC
SBS	Chr5	1164647	G-A	HOMO	INTERGENIC
SBS	Chr5	10132355	A-T	HOMO	INTERGENIC
SBS	Chr5	22664645	G-C	HOMO	INTERGENIC
SBS	Chr6	17389966	G-T	HET	INTERGENIC
SBS	Chr6	20270511	A-C	HET	INTERGENIC
SBS	Chr6	24215994	T-C	HOMO	INTRON
SBS	Chr7	15943965	G-A	HET	INTERGENIC
SBS	Chr8	1958060	C-T	HOMO	INTERGENIC
SBS	Chr8	2316747	C-T	HOMO	INTERGENIC
SBS	Chr8	10201988	G-A	HET	INTERGENIC
SBS	Chr9	15688043	G-C	HOMO	INTRON
SBS	Chr10	7597613	C-T	HOMO	INTERGENIC
SBS	Chr10	19981510	C-G	HET	INTERGENIC
SBS	Chr11	16474299	G-T	HET	INTRON
SBS	Chr11	18025916	T-A	HET	STOP_GAINED	LOC_Os11g30990
SBS	Chr11	18419593	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g31520
SBS	Chr12	1809757	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04270
SBS	Chr12	20957589	T-C	HET	INTERGENIC
SBS	Chr12	22749953	C-A	HET	INTERGENIC
SBS	Chr12	23983611	C-T	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	811079	811095	16
Deletion	Chr9	1299994	1300000	6
Deletion	Chr12	1810003	1810018	15	LOC_Os12g04270
Deletion	Chr12	2746633	2746675	42
Deletion	Chr3	3358471	3651285	292814	50
Deletion	Chr9	3753389	3753398	9	LOC_Os09g07500
Deletion	Chr11	5167001	5262000	95000	18
Deletion	Chr3	5485486	5485492	6
Deletion	Chr3	6461379	6461387	8
Deletion	Chr6	6768066	6768075	9
Deletion	Chr9	6967580	6967581	1
Deletion	Chr10	7794758	7794761	3
Deletion	Chr6	13920853	13920854	1
Deletion	Chr9	14014586	14014587	1
Deletion	Chr6	15365924	15365927	3
Deletion	Chr7	16379545	16379551	6
Deletion	Chr8	17198797	17198799	2
Deletion	Chr8	18390184	18390191	7	LOC_Os08g29930
Deletion	Chr9	22324051	22324053	2
Deletion	Chr8	24373773	24373790	17
Deletion	Chr1	25029826	25029842	16	LOC_Os01g43680
Deletion	Chr6	27151336	27151338	2
Deletion	Chr11	28004247	28004248	1	LOC_Os11g46240
Deletion	Chr1	33765363	33765367	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	427203	427204	2
Insertion	Chr8	20092101	20092103	3
Insertion	Chr2	2106504	2106505	2	LOC_Os02g04680
Insertion	Chr5	7387649	7387649	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	5268209	5680971	LOC_Os06g10880
Inversion	Chr6	5268532	5680981	LOC_Os06g10880

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4838478	Chr4	18124180	LOC_Os04g30370
Translocation	Chr9	4916899	Chr2	11824569
Translocation	Chr6	5268218	Chr1	10217449	LOC_Os01g18240
Translocation	Chr6	5268559	Chr1	10217440	LOC_Os01g18240
Translocation	Chr7	13116672	Chr4	18040849	LOC_Os07g23270
Translocation	Chr4	16021301	Chr3	25799253

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