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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26418162	G-T	HOMO	INTERGENIC
SBS	Chr1	29082263	G-T	HOMO	INTERGENIC
SBS	Chr1	4050526	T-G	HOMO	INTERGENIC
SBS	Chr11	3965517	G-A	HET	INTERGENIC
SBS	Chr11	916731	G-A	HOMO	UTR_5_PRIME
SBS	Chr12	1023404	T-A	HET	INTERGENIC
SBS	Chr12	27488177	C-T	HET	INTRON
SBS	Chr12	7784166	A-G	HET	INTRON
SBS	Chr2	13720416	C-T	HET	INTERGENIC
SBS	Chr2	24276457	T-G	HET	UTR_5_PRIME
SBS	Chr2	385492	T-A	HET	INTERGENIC
SBS	Chr3	13832185	C-T	HET	INTERGENIC
SBS	Chr3	31073652	C-T	HET	INTERGENIC
SBS	Chr4	12291590	G-A	HET	INTERGENIC
SBS	Chr4	12517463	G-T	HET	INTERGENIC
SBS	Chr4	15448152	C-T	HET	INTERGENIC
SBS	Chr4	25086619	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g42399
SBS	Chr6	11626704	C-T	HET	INTRON
SBS	Chr7	19858018	G-A	HET	INTERGENIC
SBS	Chr7	3641913	G-T	HET	INTERGENIC
SBS	Chr7	9778612	A-G	HET	INTRON
SBS	Chr8	1486139	C-A	HET	INTERGENIC
SBS	Chr8	15515935	G-A	HOMO	INTERGENIC
SBS	Chr8	22387535	A-T	HET	INTRON
SBS	Chr8	23332511	G-A	HET	INTERGENIC
SBS	Chr8	26899678	A-T	HET	INTERGENIC
SBS	Chr8	27746761	C-T	HET	INTERGENIC
SBS	Chr8	6675378	C-T	HET	INTERGENIC
SBS	Chr9	1304133	C-T	HOMO	INTRON
SBS	Chr9	1462249	T-A	HOMO	INTERGENIC
SBS	Chr9	22163500	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g38520

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	531852	531854	2
Deletion	Chr3	3445482	3445488	6
Deletion	Chr3	3634581	3634603	22
Deletion	Chr12	6782880	6782883	3	LOC_Os12g12340
Deletion	Chr10	7732939	7732948	9	LOC_Os10g14260
Deletion	Chr11	7782001	7998000	216000	27
Deletion	Chr12	7784167	7784168	1
Deletion	Chr12	7784169	7784170	1
Deletion	Chr6	8282228	8282229	1
Deletion	Chr7	12633293	12633296	3
Deletion	Chr7	12634513	12634527	14
Deletion	Chr3	15859880	15859886	6
Deletion	Chr12	19808560	19808562	2
Deletion	Chr8	19901479	19901482	3
Deletion	Chr8	20379078	20379090	12
Deletion	Chr9	21566291	21566295	4	LOC_Os09g37330
Deletion	Chr2	22295805	22295810	5
Deletion	Chr5	23238096	23238103	7
Deletion	Chr3	24645722	24645743	21
Deletion	Chr6	24983646	24983651	5
Deletion	Chr4	25903850	25903862	12
Deletion	Chr6	27437258	27437259	1	LOC_Os06g45380
Deletion	Chr2	28311420	28311425	5
Deletion	Chr4	31269769	31269786	17

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	5497368	5497368	1
Insertion	Chr12	24174878	24174879	2
Insertion	Chr4	14006455	14006456	2
Insertion	Chr8	20425353	20425354	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	4810116	4810262	LOC_Os03g09210
Inversion	Chr4	28216618	28217016	LOC_Os04g47570

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	8790988	Chr2	26133307	LOC_Os11g15520
Translocation	Chr11	8797261	Chr5	33986	2
Translocation	Chr11	8797273	Chr2	26130028	LOC_Os11g15520
Translocation	Chr11	8836415	Chr5	33997	LOC_Os05g01010

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