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Mutant Information |
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Mutant Name | FN558-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN558-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 26
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr2 | 26063084 | G-T | HET | INTRON | |
SBS | Chr2 | 28096852 | A-G | HET | INTERGENIC | |
SBS | Chr2 | 30987837 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g50740 |
SBS | Chr3 | 290118 | T-C | HET | INTERGENIC | |
SBS | Chr3 | 10690475 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 10690476 | A-T | HET | INTERGENIC | |
SBS | Chr3 | 18203167 | A-G | HET | INTERGENIC | |
SBS | Chr3 | 25037541 | T-C | HET | INTRON | |
SBS | Chr4 | 4935555 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g09284 |
SBS | Chr4 | 9441550 | C-T | HOMO | INTERGENIC | |
SBS | Chr4 | 21535489 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 28636727 | G-A | HOMO | INTERGENIC | |
SBS | Chr5 | 23782235 | A-G | HOMO | INTERGENIC | |
SBS | Chr6 | 3292372 | G-A | HOMO | INTERGENIC | |
SBS | Chr6 | 4814899 | C-T | HOMO | INTERGENIC | |
SBS | Chr7 | 15741631 | A-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr8 | 17734841 | A-T | HOMO | INTERGENIC | |
SBS | Chr10 | 10080894 | A-G | HOMO | INTERGENIC | |
SBS | Chr10 | 11325493 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g21950 |
SBS | Chr11 | 539221 | G-A | HET | INTERGENIC | |
SBS | Chr11 | 14164428 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g24840 |
SBS | Chr11 | 27595828 | T-C | HET | SYNONYMOUS_CODING | |
SBS | Chr12 | 2829322 | A-C | HET | INTERGENIC | |
SBS | Chr12 | 10687572 | C-G | HET | INTERGENIC | |
SBS | Chr12 | 19067541 | G-C | HET | INTERGENIC | |
SBS | Chr12 | 26806715 | A-G | HOMO | START_GAINED | LOC_Os12g43165 |
Deletions: 15
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr6 | 1453901 | 1453907 | 6 | |
Deletion | Chr4 | 4338615 | 4338619 | 4 | LOC_Os04g08150 |
Deletion | Chr12 | 7341424 | 7341429 | 5 | LOC_Os12g13174 |
Deletion | Chr12 | 7658061 | 7658150 | 89 | LOC_Os12g13620 |
Deletion | Chr2 | 12079171 | 12079172 | 1 | |
Deletion | Chr10 | 14392744 | 14392745 | 1 | |
Deletion | Chr8 | 15279405 | 15279406 | 1 | |
Deletion | Chr1 | 21422552 | 21422553 | 1 | |
Deletion | Chr3 | 26153363 | 26153373 | 10 | LOC_Os03g46260 |
Deletion | Chr1 | 26467554 | 26467567 | 13 | |
Deletion | Chr3 | 26725857 | 26725858 | 1 | |
Deletion | Chr2 | 26901267 | 26901286 | 19 | |
Deletion | Chr1 | 32103648 | 32103650 | 2 | |
Deletion | Chr1 | 37912024 | 37912025 | 1 | |
Deletion | Chr1 | 40421947 | 40421949 | 2 |
Insertions: 7
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 28087800 | 28168375 | LOC_Os01g49024 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 7101185 | Chr3 | 13835923 | |
Translocation | Chr11 | 15854784 | Chr1 | 28087842 | |
Translocation | Chr11 | 15861409 | Chr1 | 28168370 | LOC_Os01g49024 |