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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	10080894	A-G	HOMO	INTERGENIC
SBS	Chr10	11325493	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g21950
SBS	Chr11	14164428	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g24840
SBS	Chr11	27595828	T-C	HET	SYNONYMOUS_CODING
SBS	Chr11	539221	G-A	HET	INTERGENIC
SBS	Chr12	10687572	C-G	HET	INTERGENIC
SBS	Chr12	19067541	G-C	HET	INTERGENIC
SBS	Chr12	26806715	A-G	HOMO	START_GAINED	LOC_Os12g43165
SBS	Chr12	2829322	A-C	HET	INTERGENIC
SBS	Chr2	26063084	G-T	HET	INTRON
SBS	Chr2	28096852	A-G	HET	INTERGENIC
SBS	Chr2	30987837	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g50740
SBS	Chr3	10690475	C-T	HET	INTERGENIC
SBS	Chr3	10690476	A-T	HET	INTERGENIC
SBS	Chr3	18203167	A-G	HET	INTERGENIC
SBS	Chr3	25037541	T-C	HET	INTRON
SBS	Chr3	290118	T-C	HET	INTERGENIC
SBS	Chr4	21535489	C-T	HET	INTERGENIC
SBS	Chr4	28636727	G-A	HOMO	INTERGENIC
SBS	Chr4	4935555	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g09284
SBS	Chr4	9441550	C-T	HOMO	INTERGENIC
SBS	Chr5	23782235	A-G	HOMO	INTERGENIC
SBS	Chr6	3292372	G-A	HOMO	INTERGENIC
SBS	Chr6	4814899	C-T	HOMO	INTERGENIC
SBS	Chr7	15741631	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	17734841	A-T	HOMO	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1453901	1453907	6
Deletion	Chr4	4338615	4338619	4	LOC_Os04g08150
Deletion	Chr12	7341424	7341429	5	LOC_Os12g13174
Deletion	Chr12	7658061	7658150	89	LOC_Os12g13620
Deletion	Chr2	12079171	12079172	1
Deletion	Chr10	14392744	14392745	1
Deletion	Chr8	15279405	15279406	1
Deletion	Chr1	21422552	21422553	1
Deletion	Chr3	26153363	26153373	10	LOC_Os03g46260
Deletion	Chr1	26467554	26467567	13
Deletion	Chr3	26725857	26725858	1
Deletion	Chr2	26901267	26901286	19
Deletion	Chr1	32103648	32103650	2
Deletion	Chr1	37912024	37912025	1
Deletion	Chr1	40421947	40421949	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12883923	12883924	2
Insertion	Chr11	19039861	19039862	2
Insertion	Chr2	24576638	24576640	3
Insertion	Chr6	12924608	12924609	2
Insertion	Chr6	19660768	19660769	2
Insertion	Chr6	3255931	3255932	2
Insertion	Chr8	776974	776976	3

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	28087800	28168375	LOC_Os01g49024

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	7101185	Chr3	13835923
Translocation	Chr11	15854784	Chr1	28087842
Translocation	Chr11	15861409	Chr1	28168370	LOC_Os01g49024

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