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Mutant Information

Mutant Name	FN559-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN559-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22375148	G-A	HOMO	INTERGENIC
SBS	Chr1	23658829	C-T	HOMO	INTERGENIC
SBS	Chr2	22303158	G-C	HET	INTERGENIC
SBS	Chr3	29909475	G-C	HET	INTRON
SBS	Chr4	8645181	G-A	HOMO	INTERGENIC
SBS	Chr4	8645182	A-C	HOMO	INTERGENIC
SBS	Chr5	26428114	T-C	HOMO	INTERGENIC
SBS	Chr6	137747	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g01170
SBS	Chr6	2930048	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g06310
SBS	Chr6	9688186	G-A	HET	INTERGENIC
SBS	Chr6	22037916	G-A	HET	INTERGENIC
SBS	Chr7	29377084	A-G	HET	INTRON
SBS	Chr8	10814592	C-T	HOMO	INTERGENIC
SBS	Chr8	14983215	T-G	HOMO	INTRON
SBS	Chr9	2992485	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g06360
SBS	Chr9	3099346	T-A	HET	INTRON
SBS	Chr10	7307498	G-A	HOMO	INTRON
SBS	Chr11	24307400	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g40690

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1782493	1782502	9
Deletion	Chr6	3798056	3798061	5
Deletion	Chr11	6400579	6400584	5
Deletion	Chr5	6575117	6575125	8
Deletion	Chr9	8429062	8429065	3
Deletion	Chr8	17796000	17796011	11
Deletion	Chr1	18302129	18302131	2
Deletion	Chr3	21145510	21145513	3
Deletion	Chr1	22525575	22525576	1
Deletion	Chr8	22649072	22649078	6
Deletion	Chr5	22874025	22874029	4
Deletion	Chr3	23837635	23837639	4
Deletion	Chr7	29473577	29473588	11	LOC_Os07g49210
Deletion	Chr2	31494574	31494576	2
Deletion	Chr2	32914605	32914607	2
Deletion	Chr2	33349011	33349021	10

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	10457954	10457954	1
Insertion	Chr4	18607973	18607973	1

No Inversion

No Translocation