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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2320499	G-A	HOMO	INTERGENIC
SBS	Chr1	25493192	T-A	HET	INTERGENIC
SBS	Chr1	28124056	G-A	HET	INTERGENIC
SBS	Chr1	29952476	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g52090
SBS	Chr1	42044890	G-A	HET	INTERGENIC
SBS	Chr10	12206886	T-C	HET	INTERGENIC
SBS	Chr10	15688985	A-G	HET	INTRON
SBS	Chr10	15688986	G-T	HET	INTRON
SBS	Chr10	15688987	G-A	HET	INTRON
SBS	Chr10	6824485	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g12260
SBS	Chr12	17816212	T-C	HOMO	INTERGENIC
SBS	Chr12	22902035	C-A	HET	INTERGENIC
SBS	Chr12	25005644	G-T	HOMO	INTRON
SBS	Chr12	27207326	C-A	HOMO	INTERGENIC
SBS	Chr12	8233157	C-A	HOMO	INTERGENIC
SBS	Chr2	17791480	T-G	HOMO	INTERGENIC
SBS	Chr2	7718733	A-C	HOMO	INTERGENIC
SBS	Chr3	21011170	A-G	HET	INTERGENIC
SBS	Chr3	4487290	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g08700
SBS	Chr4	19950274	G-T	HET	INTERGENIC
SBS	Chr4	23171086	C-T	HOMO	INTERGENIC
SBS	Chr4	34130330	G-A	HET	INTRON
SBS	Chr4	34563303	T-A	HET	INTERGENIC
SBS	Chr4	35396778	C-T	HET	INTERGENIC
SBS	Chr5	2291310	T-G	HOMO	INTERGENIC
SBS	Chr6	19590654	C-T	HET	INTERGENIC
SBS	Chr6	3028406	T-C	HET	INTERGENIC
SBS	Chr6	6910923	T-A	HET	INTERGENIC
SBS	Chr8	10880396	C-T	HET	INTERGENIC
SBS	Chr8	3346894	C-T	HET	INTERGENIC
SBS	Chr8	4905593	G-A	HET	INTERGENIC
SBS	Chr8	7553117	T-A	HOMO	INTERGENIC
SBS	Chr8	9242663	C-T	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	284675	284676	1
Deletion	Chr7	3764717	3764721	4
Deletion	Chr2	4169766	4169774	8
Deletion	Chr2	7603092	7603108	16
Deletion	Chr8	8656633	8656646	13
Deletion	Chr8	9775983	9775994	11
Deletion	Chr2	11005430	11005436	6
Deletion	Chr1	12779066	12779077	11
Deletion	Chr1	14539098	14539102	4
Deletion	Chr11	15596275	15596291	16
Deletion	Chr10	15918205	15918216	11
Deletion	Chr11	17745865	17745887	22
Deletion	Chr10	19859432	19859440	8	LOC_Os10g37110
Deletion	Chr3	20480430	20480433	3	LOC_Os03g36900
Deletion	Chr8	20935133	20935138	5
Deletion	Chr4	23284356	23284362	6
Deletion	Chr1	25501968	25501970	2	LOC_Os01g44960
Deletion	Chr3	30653359	30653360	1
Deletion	Chr2	32895888	32895894	6

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	27134019	27134020	2	LOC_Os01g47470
Insertion	Chr10	10569563	10569565	3
Insertion	Chr11	28862757	28862759	3
Insertion	Chr4	2305618	2305618	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	14359572	14687087
Inversion	Chr11	23214684	23243952	LOC_Os11g38990
Inversion	Chr11	23215289	23243919	LOC_Os11g38990

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	15021087	Chr9	15309206	LOC_Os09g25520
Translocation	Chr10	17080600	Chr1	14288689
Translocation	Chr12	17435476	Chr6	17892851
Translocation	Chr6	17888769	Chr1	18000990	2
Translocation	Chr6	17891559	Chr1	18000987	LOC_Os01g32800
Translocation	Chr11	23214640	Chr10	19426415	LOC_Os11g38990
Translocation	Chr11	23215274	Chr10	19426403	LOC_Os11g38990

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