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Mutant Information

Mutant Name	FN563-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN563-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1338424	C-A	HET	UTR_3_PRIME
SBS	Chr1	23187379	T-C	HOMO	INTERGENIC
SBS	Chr1	31394315	C-T	HET	INTERGENIC
SBS	Chr1	5274477	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g10110
SBS	Chr11	13046152	G-T	HET	INTERGENIC
SBS	Chr11	20809860	G-T	HOMO	INTRON
SBS	Chr2	28599315	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g46880
SBS	Chr3	14544754	T-A	HET	UTR_3_PRIME
SBS	Chr3	14812964	G-A	HOMO	INTERGENIC
SBS	Chr3	5804199	C-G	HET	INTERGENIC
SBS	Chr3	6060102	T-C	HET	INTRON
SBS	Chr3	6843735	G-A	HET	INTERGENIC
SBS	Chr3	6843736	C-A	HET	INTERGENIC
SBS	Chr4	1304862	C-G	HOMO	INTERGENIC
SBS	Chr4	4198899	G-C	HET	INTERGENIC
SBS	Chr5	11560531	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g19850
SBS	Chr5	16011894	C-A	HET	INTERGENIC
SBS	Chr8	7046479	T-C	HET	INTERGENIC
SBS	Chr9	6509930	C-A	HOMO	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	618677	618679	2
Deletion	Chr6	850557	850577	20
Deletion	Chr10	1780659	1780664	5
Deletion	Chr11	3239998	3240000	2
Deletion	Chr3	5675721	5675729	8
Deletion	Chr12	10750874	10750880	6
Deletion	Chr3	11319515	11319518	3
Deletion	Chr5	12453714	12453718	4	LOC_Os05g21180
Deletion	Chr8	13022887	13022892	5	LOC_Os08g21740
Deletion	Chr7	13683131	13683133	2
Deletion	Chr11	20276169	20276175	6
Deletion	Chr8	22601109	22601141	32
Deletion	Chr12	23395648	23395652	4
Deletion	Chr11	24097704	24097705	1	LOC_Os11g40420
Deletion	Chr6	27652269	27652270	1
Deletion	Chr5	28768648	28768661	13
Deletion	Chr5	29314474	29314475	1
Deletion	Chr1	36490001	36524000	34000	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	5738733	5738733	1	LOC_Os12g10700
Insertion	Chr2	24235268	24235278	11
Insertion	Chr3	1257473	1257474	2
Insertion	Chr8	16396233	16396258	26

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2210012	3011900	LOC_Os05g06014
Inversion	Chr5	2210032	3011899	LOC_Os05g06014
Inversion	Chr8	22194201	22536065

No Translocation