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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24610911	C-A	HET	INTERGENIC
SBS	Chr1	39566970	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g68060
SBS	Chr1	9151283	T-C	HET	INTERGENIC
SBS	Chr10	14189140	A-G	HOMO	INTRON
SBS	Chr12	21187700	C-T	HOMO	INTRON
SBS	Chr12	24095510	G-A	HET	INTERGENIC
SBS	Chr12	25552330	T-A	HOMO	INTERGENIC
SBS	Chr12	3499017	G-T	HET	INTERGENIC
SBS	Chr2	2086172	C-T	HET	INTERGENIC
SBS	Chr2	27130995	C-A	HOMO	INTERGENIC
SBS	Chr2	32817567	C-A	HET	SYNONYMOUS_CODING
SBS	Chr2	9679755	T-A	HET	INTERGENIC
SBS	Chr3	12146766	G-A	HET	INTRON
SBS	Chr3	17500410	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g30710
SBS	Chr3	29884297	T-C	HET	SPLICE_SITE_REGION
SBS	Chr3	6377061	T-A	HET	INTERGENIC
SBS	Chr3	7905785	A-T	HET	INTERGENIC
SBS	Chr4	12428335	A-T	HET	INTERGENIC
SBS	Chr4	12428336	G-T	HET	INTERGENIC
SBS	Chr4	639704	A-T	HET	INTERGENIC
SBS	Chr5	15799292	C-A	HET	INTERGENIC
SBS	Chr5	20702660	G-T	HET	INTERGENIC
SBS	Chr5	625228	A-G	HET	SYNONYMOUS_CODING
SBS	Chr6	7464069	A-G	HOMO	INTERGENIC
SBS	Chr7	18060858	G-A	HET	INTERGENIC
SBS	Chr8	18560232	A-T	HET	INTRON
SBS	Chr8	4084911	G-A	HET	INTRON
SBS	Chr9	20540193	A-G	HET	UTR_5_PRIME
SBS	Chr9	20646050	G-A	HET	INTERGENIC
SBS	Chr9	5245239	C-A	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1026190	1026192	2
Deletion	Chr3	3943024	3943032	8
Deletion	Chr6	6423372	6423378	6
Deletion	Chr6	8038099	8038100	1
Deletion	Chr5	8390617	8390618	1
Deletion	Chr8	8633538	8633539	1	LOC_Os08g14390
Deletion	Chr5	10115670	11321089	1205419	177
Deletion	Chr1	10319881	10319884	3	LOC_Os01g18375
Deletion	Chr8	10788414	10788421	7
Deletion	Chr8	14153087	14153089	2
Deletion	Chr12	17844095	17844106	11
Deletion	Chr8	19661820	19661822	2
Deletion	Chr9	20164001	20202000	38000	6
Deletion	Chr8	20388391	20388393	2
Deletion	Chr7	24159130	24159132	2
Deletion	Chr2	25241326	25241332	6	LOC_Os02g42000
Deletion	Chr12	25486102	25486110	8
Deletion	Chr2	27539600	27539604	4
Deletion	Chr6	27996341	27996349	8
Deletion	Chr2	28642041	28642050	9
Deletion	Chr4	28840144	28840462	318
Deletion	Chr7	29657456	29666075	8619	2
Deletion	Chr2	32368817	32368819	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	41105326	41105326	1
Insertion	Chr11	10057103	10057104	2
Insertion	Chr2	24576638	24576640	3
Insertion	Chr4	20884446	20884446	1
Insertion	Chr6	28509729	28509729	1
Insertion	Chr6	29472167	29472168	2
Insertion	Chr7	11319117	11319118	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5624620	5995868
Inversion	Chr5	5624744	5995876
Inversion	Chr3	26211283	27038125	LOC_Os03g46340

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2498552	Chr5	11313782	LOC_Os08g04900
Translocation	Chr9	21595651	Chr5	27439119	LOC_Os09g37446
Translocation	Chr9	21596749	Chr5	27439114	LOC_Os09g37446

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