Search Results
| Mutant Information |
|---|
| Mutant Name | FN568-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN568-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 3383902 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 22448541 | T-C | HOMO | UTR_5_PRIME | |
| SBS | Chr2 | 1362872 | T-C | HET | INTRON | |
| SBS | Chr2 | 3871625 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g07490 |
| SBS | Chr2 | 19022936 | T-C | HET | UTR_3_PRIME | |
| SBS | Chr2 | 29831020 | C-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 29831038 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 29831039 | C-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 30752272 | A-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g50360 |
| SBS | Chr2 | 31295901 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g51140 |
| SBS | Chr3 | 4467224 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 24572840 | T-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 33511067 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 1531463 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 3396895 | T-G | HET | INTERGENIC | |
| SBS | Chr5 | 6896719 | G-A | HOMO | INTRON | |
| SBS | Chr6 | 27452834 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 29278921 | A-G | HOMO | INTRON | |
| SBS | Chr8 | 2955496 | T-C | HET | INTERGENIC | |
| SBS | Chr8 | 20366015 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g32850 |
| SBS | Chr9 | 1767097 | C-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 4623164 | G-C | HOMO | INTERGENIC | |
| SBS | Chr9 | 7091073 | A-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 9797560 | A-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g16040 |
| SBS | Chr11 | 23808694 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 2968853 | T-C | HET | INTERGENIC | |
| SBS | Chr12 | 12283577 | A-G | HET | INTRON |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 863495 | 863508 | 13 | |
| Deletion | Chr2 | 1028638 | 1028639 | 1 | |
| Deletion | Chr7 | 6672424 | 6672425 | 1 | |
| Deletion | Chr6 | 7619367 | 7619377 | 10 | LOC_Os06g13740 |
| Deletion | Chr11 | 7637279 | 7637280 | 1 | |
| Deletion | Chr8 | 9018617 | 9018618 | 1 | LOC_Os08g14950 |
| Deletion | Chr8 | 9716338 | 9716339 | 1 | |
| Deletion | Chr3 | 9723834 | 9723839 | 5 | |
| Deletion | Chr2 | 10431001 | 10489000 | 58000 | 10 |
| Deletion | Chr9 | 11728855 | 11728867 | 12 | |
| Deletion | Chr7 | 12768366 | 12768367 | 1 | |
| Deletion | Chr3 | 17767527 | 17767528 | 1 | LOC_Os03g31200 |
| Deletion | Chr5 | 18533975 | 18535680 | 1705 | 2 |
| Deletion | Chr10 | 20349759 | 20349778 | 19 | |
| Deletion | Chr7 | 21540651 | 21540671 | 20 | |
| Deletion | Chr6 | 23213065 | 23213066 | 1 | |
| Deletion | Chr5 | 28396613 | 28396618 | 5 | |
| Deletion | Chr2 | 28470938 | 28470947 | 9 | |
| Deletion | Chr6 | 29159067 | 29159071 | 4 | |
| Deletion | Chr2 | 31824896 | 31824904 | 8 | LOC_Os02g51970 |
| Deletion | Chr1 | 40196001 | 40373000 | 177000 | 21 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 12864063 | 12864066 | 4 | |
| Insertion | Chr4 | 16749299 | 16749300 | 2 | |
| Insertion | Chr9 | 8979811 | 8979822 | 12 | |
| Insertion | Chr12 | 12283390 | 12283390 | 1 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 11310848 | Chr5 | 18535679 | 2 |
| Translocation | Chr10 | 11310850 | Chr5 | 18533979 | LOC_Os10g21940 |