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| Mutant Information |
|---|
| Mutant Name | FN569-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN569-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31003493 | T-G | HET | INTERGENIC | |
| SBS | Chr1 | 5678795 | G-A | HET | INTRON | |
| SBS | Chr10 | 14955429 | A-G | HET | INTRON | |
| SBS | Chr10 | 20885221 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 2143933 | A-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr10 | 4253411 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 10500783 | C-T | HOMO | INTRON | |
| SBS | Chr12 | 13547890 | C-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 17055134 | G-A | HET | INTRON | |
| SBS | Chr12 | 25363254 | G-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 31615303 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 4304780 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g08130 |
| SBS | Chr3 | 15289691 | A-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 11227300 | G-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 20951743 | C-T | HOMO | INTRON | |
| SBS | Chr4 | 29637645 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 24112958 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g41166 |
| SBS | Chr6 | 26923233 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g44590 |
| SBS | Chr6 | 9873073 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 1107296 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g02970 |
| SBS | Chr7 | 94740 | C-G | HET | INTERGENIC | |
| SBS | Chr8 | 14166876 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 11941779 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 14517226 | G-A | HET | INTERGENIC |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 4302676 | 4302677 | 1 | LOC_Os02g08130 |
| Deletion | Chr10 | 4504001 | 4553000 | 49000 | 4 |
| Deletion | Chr6 | 4807611 | 4807614 | 3 | |
| Deletion | Chr5 | 9087672 | 9087674 | 2 | |
| Deletion | Chr12 | 9788001 | 9829000 | 41000 | 7 |
| Deletion | Chr6 | 12274261 | 12274263 | 2 | |
| Deletion | Chr10 | 14955560 | 14955564 | 4 | |
| Deletion | Chr2 | 15721186 | 15721187 | 1 | |
| Deletion | Chr9 | 19337338 | 19337339 | 1 | LOC_Os09g32380 |
| Deletion | Chr8 | 19737998 | 19738028 | 30 | |
| Deletion | Chr4 | 20868624 | 20868667 | 43 | |
| Deletion | Chr10 | 21604078 | 21604080 | 2 | LOC_Os10g40324 |
| Deletion | Chr5 | 23866835 | 23866850 | 15 | |
| Deletion | Chr3 | 30928784 | 30928785 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 11928195 | 11928195 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 3417366 | 3717152 | 2 |
| Inversion | Chr10 | 3736569 | 4645218 | |
| Inversion | Chr10 | 4503765 | 6545740 | |
| Inversion | Chr10 | 6408544 | 6454543 | LOC_Os10g11680 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 3757534 | Chr4 | 30426530 | LOC_Os05g07120 |
| Translocation | Chr5 | 3780342 | Chr2 | 30832021 | |
| Translocation | Chr4 | 34927584 | Chr3 | 811559 | |
| Translocation | Chr4 | 34927591 | Chr3 | 811567 |