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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10021558	G-A	HET	UTR_3_PRIME
SBS	Chr1	40101497	T-C	HOMO	UTR_3_PRIME
SBS	Chr1	41106365	G-A	HET	INTERGENIC
SBS	Chr1	8770062	T-C	HET	INTERGENIC
SBS	Chr1	9404185	A-G	HET	INTERGENIC
SBS	Chr11	14652917	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g25690
SBS	Chr11	14652921	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g25690
SBS	Chr11	27703664	G-A	HOMO	INTERGENIC
SBS	Chr11	9718876	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g17430
SBS	Chr12	21167618	C-A	HET	INTERGENIC
SBS	Chr2	12785058	T-A	HOMO	INTERGENIC
SBS	Chr2	12785078	T-C	HOMO	INTERGENIC
SBS	Chr2	8847343	C-G	HOMO	INTERGENIC
SBS	Chr3	19616088	G-A	HET	INTRON
SBS	Chr3	19666545	C-T	HET	INTERGENIC
SBS	Chr3	23586134	A-G	HET	INTRON
SBS	Chr3	25526419	G-T	HET	INTERGENIC
SBS	Chr4	10929556	C-T	HET	INTRON
SBS	Chr4	29760879	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g49900
SBS	Chr4	6494554	T-G	HET	UTR_3_PRIME
SBS	Chr6	7655654	T-A	HET	INTERGENIC
SBS	Chr8	8807498	C-T	HOMO	INTERGENIC
SBS	Chr9	3972029	A-T	HET	INTRON

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	3701573	3701574	1
Deletion	Chr3	6016475	6016477	2
Deletion	Chr3	6546001	6581000	35000	6
Deletion	Chr10	8926827	8926828	1
Deletion	Chr8	18150761	18150801	40
Deletion	Chr5	18706226	18706251	25
Deletion	Chr11	18718026	18718037	11
Deletion	Chr3	18829442	18829443	1
Deletion	Chr7	19474913	19474925	12	LOC_Os07g32650
Deletion	Chr5	23120217	23120262	45
Deletion	Chr6	24035838	24035849	11	LOC_Os06g40360
Deletion	Chr5	25667348	25667349	1	LOC_Os05g44170
Deletion	Chr1	26361146	26361147	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	2306962	2306973	12
Insertion	Chr11	8300268	8300269	2
Insertion	Chr12	3959845	3959846	2
Insertion	Chr2	8785223	8785227	5

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	25609150	26030200	2
Inversion	Chr3	30447315	30513002

No Translocation

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