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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16991759	T-C	HET	SYNONYMOUS_CODING
SBS	Chr1	21023665	G-A	HET	INTERGENIC
SBS	Chr1	33877277	C-T	HET	INTERGENIC
SBS	Chr1	39034676	C-T	HOMO	UTR_5_PRIME
SBS	Chr2	4629751	C-T	HET	UTR_3_PRIME
SBS	Chr2	4681013	C-T	HET	INTERGENIC
SBS	Chr2	20868190	A-C	HET	INTERGENIC
SBS	Chr2	27791562	C-T	HOMO	INTRON
SBS	Chr3	1500964	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g03470
SBS	Chr3	13171529	T-C	HET	INTERGENIC
SBS	Chr3	21220020	A-G	HOMO	INTERGENIC
SBS	Chr3	36058685	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g63830
SBS	Chr4	8028897	G-A	HET	INTERGENIC
SBS	Chr4	12933098	T-A	HET	INTERGENIC
SBS	Chr4	13696780	C-T	HET	INTERGENIC
SBS	Chr6	8907911	T-C	HET	INTERGENIC
SBS	Chr6	10565587	C-G	HET	SYNONYMOUS_CODING
SBS	Chr6	12110400	A-G	HET	SYNONYMOUS_CODING
SBS	Chr6	28652403	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g47260
SBS	Chr8	2995225	C-T	HET	INTERGENIC
SBS	Chr8	5194750	G-A	HET	INTERGENIC
SBS	Chr8	20659940	T-C	HET	INTERGENIC
SBS	Chr8	20878194	A-T	HET	INTERGENIC
SBS	Chr9	20939052	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g36280
SBS	Chr10	13515046	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	9018913	C-A	HOMO	INTRON
SBS	Chr11	12076587	C-T	HOMO	INTERGENIC
SBS	Chr12	5166685	A-T	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1240055	1240064	9
Deletion	Chr2	1620012	1620021	9	LOC_Os02g03840
Deletion	Chr10	1712562	1712566	4
Deletion	Chr7	3302159	3302170	11
Deletion	Chr9	8380012	8380039	27
Deletion	Chr3	9383981	9383986	5
Deletion	Chr9	13389508	13389518	10
Deletion	Chr12	14086618	14086623	5
Deletion	Chr1	14172443	14172446	3
Deletion	Chr4	14747581	14747585	4
Deletion	Chr9	15259692	15259693	1
Deletion	Chr11	17199523	17199528	5
Deletion	Chr4	17841994	17842004	10
Deletion	Chr9	22810843	22810862	19	LOC_Os09g39780
Deletion	Chr10	23030791	23030804	13
Deletion	Chr1	23377380	23377381	1	LOC_Os01g41310
Deletion	Chr6	24777597	24777606	9
Deletion	Chr4	24988532	24988564	32
Deletion	Chr11	25199850	25199857	7	LOC_Os11g41900
Deletion	Chr12	26405239	26405248	9
Deletion	Chr5	29072472	29072491	19
Deletion	Chr3	30192133	30192134	1
Deletion	Chr1	31287136	31287143	7	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	3107599	3107599	1
Insertion	Chr2	17714821	17714821	1	LOC_Os02g29770
Insertion	Chr4	17788550	17788552	3
Insertion	Chr4	19644590	19644591	2
Insertion	Chr7	1455532	1455543	12
Insertion	Chr11	19279414	19279414	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1206486	1427476	LOC_Os02g03510
Inversion	Chr2	1213650	1427477	LOC_Os02g03510
Inversion	Chr2	14740763	15389259	LOC_Os02g26190

No Translocation

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