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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2665738	C-A	HET	INTRON
SBS	Chr1	9125007	C-T	HOMO	INTERGENIC
SBS	Chr1	21652474	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g38550
SBS	Chr2	6340551	G-T	HET	INTERGENIC
SBS	Chr3	14353016	G-C	HET	INTERGENIC
SBS	Chr3	27540360	T-C	HET	INTRON
SBS	Chr4	8677736	G-C	HET	INTERGENIC
SBS	Chr4	11046787	A-G	HET	INTERGENIC
SBS	Chr5	1924540	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g04220
SBS	Chr5	10902650	T-A	HET	INTRON
SBS	Chr5	15397735	C-T	HET	INTERGENIC
SBS	Chr5	15918005	A-T	HET	INTERGENIC
SBS	Chr6	2421030	C-T	HET	UTR_3_PRIME
SBS	Chr6	14463608	A-T	HOMO	INTRON
SBS	Chr7	11564987	A-G	HOMO	INTRON
SBS	Chr7	19874312	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g33260
SBS	Chr7	19964605	G-A	HOMO	INTERGENIC
SBS	Chr9	1413990	A-G	HET	INTERGENIC
SBS	Chr9	1423655	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g03030
SBS	Chr9	5412654	T-C	HET	INTERGENIC
SBS	Chr9	6814999	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g12070
SBS	Chr9	14398884	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g24250
SBS	Chr9	14398885	G-C	HET	SYNONYMOUS_CODING
SBS	Chr10	9463925	C-T	HOMO	INTRON
SBS	Chr11	7587452	G-A	HOMO	START_GAINED	LOC_Os11g13800
SBS	Chr12	10458894	G-A	HET	INTERGENIC
SBS	Chr12	12072452	A-G	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	365931	365949	18	LOC_Os05g01610
Deletion	Chr1	5335781	5335788	7
Deletion	Chr1	7990094	8003262	13168	3
Deletion	Chr5	8078365	8078367	2
Deletion	Chr6	8310747	8310751	4	LOC_Os06g14740
Deletion	Chr5	9638002	9638008	6
Deletion	Chr7	10898352	10898356	4
Deletion	Chr5	11241072	11241075	3
Deletion	Chr2	11706137	11706140	3	LOC_Os02g19890
Deletion	Chr9	15491216	15491240	24
Deletion	Chr4	17234811	17234814	3
Deletion	Chr4	19377445	19377447	2
Deletion	Chr12	21053975	21054000	25
Deletion	Chr12	22651384	22654784	3400	LOC_Os12g36940
Deletion	Chr12	22707936	22707955	19
Deletion	Chr10	22884834	22884907	73
Deletion	Chr1	28675660	28675664	4	LOC_Os01g49930

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	16212030	16212031	2
Insertion	Chr8	20826505	20826506	2
Insertion	Chr1	9329868	9329868	1
Insertion	Chr2	29365387	29365389	3	LOC_Os02g47980
Insertion	Chr7	12674433	12674434	2
Insertion	Chr11	16764607	16764608	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	13616665	16215983	LOC_Os07g27790
Inversion	Chr7	13616676	16215979	LOC_Os07g27790

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	28550913	Chr5	7225020	LOC_Os07g47810
Translocation	Chr7	28551712	Chr5	7225012

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