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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5920304	A-G	HET	INTERGENIC
SBS	Chr1	7008403	G-T	HOMO	INTERGENIC
SBS	Chr1	7640625	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g13620
SBS	Chr1	7852020	A-T	HET	INTERGENIC
SBS	Chr10	12654956	A-G	HOMO	INTERGENIC
SBS	Chr10	586034	C-A	HOMO	INTERGENIC
SBS	Chr10	7525217	T-C	HOMO	INTRON
SBS	Chr11	10435995	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g18510
SBS	Chr11	17206488	G-A	HET	INTERGENIC
SBS	Chr11	20984773	C-G	HET	INTERGENIC
SBS	Chr12	11468824	T-G	HOMO	UTR_3_PRIME
SBS	Chr12	19977282	A-G	HET	INTRON
SBS	Chr12	2745916	G-A	HOMO	INTERGENIC
SBS	Chr2	14180966	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g24480
SBS	Chr2	15430986	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g26280
SBS	Chr2	15553281	C-T	HOMO	INTRON
SBS	Chr2	15553290	A-G	HOMO	INTRON
SBS	Chr3	11032294	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g19600
SBS	Chr3	1843288	G-T	HET	INTERGENIC
SBS	Chr3	1843289	A-T	HET	INTERGENIC
SBS	Chr3	22939602	C-T	HOMO	INTERGENIC
SBS	Chr3	31783985	A-T	HOMO	INTERGENIC
SBS	Chr4	16315089	G-A	HOMO	INTERGENIC
SBS	Chr4	18382055	C-T	HET	INTERGENIC
SBS	Chr4	26353955	T-C	HET	INTERGENIC
SBS	Chr4	3116779	C-T	HOMO	STOP_GAINED	LOC_Os04g06010
SBS	Chr4	5042545	A-G	HET	SPLICE_SITE_REGION
SBS	Chr5	14832644	C-T	HOMO	INTERGENIC
SBS	Chr5	19309717	G-A	HOMO	INTERGENIC
SBS	Chr5	3519185	G-T	HOMO	INTERGENIC
SBS	Chr6	20104567	C-T	HET	INTERGENIC
SBS	Chr6	669955	G-A	HET	INTERGENIC
SBS	Chr7	5539266	A-C	HET	INTERGENIC
SBS	Chr7	7126831	G-A	HET	INTERGENIC
SBS	Chr7	7665599	T-C	HET	INTERGENIC
SBS	Chr8	14275996	C-T	HOMO	INTERGENIC
SBS	Chr8	7752170	T-C	HET	INTERGENIC
SBS	Chr9	14188553	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g23810
SBS	Chr9	20654288	G-A	HET	INTERGENIC
SBS	Chr9	7082778	T-G	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	768064	768069	5
Deletion	Chr10	1508141	1508143	2
Deletion	Chr7	2084356	2084362	6	LOC_Os07g04700
Deletion	Chr3	2522886	2522896	10
Deletion	Chr7	3283309	3283314	5
Deletion	Chr11	6424001	6458000	34000	7
Deletion	Chr11	8162152	8163431	1279	LOC_Os11g14544
Deletion	Chr1	8218110	8218410	300
Deletion	Chr7	9012422	9012430	8
Deletion	Chr6	12289286	12289288	2
Deletion	Chr1	12431652	12431653	1
Deletion	Chr11	16221001	16273000	52000	7
Deletion	Chr4	16294617	16294619	2
Deletion	Chr5	24347445	24347446	1
Deletion	Chr8	27883292	27883328	36
Deletion	Chr4	28953259	28953299	40
Deletion	Chr3	29097674	29097679	5
Deletion	Chr4	30201756	30219650	17894	3
Deletion	Chr1	38330224	38330234	10	LOC_Os01g66050

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	28175908	28175911	4
Insertion	Chr5	18183649	18183649	1
Insertion	Chr5	4779596	4779597	2
Insertion	Chr6	21372446	21372451	6	LOC_Os06g36390

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1772343	2990107	LOC_Os12g06270
Inversion	Chr11	5539100	6233776	LOC_Os11g11262
Inversion	Chr11	5565150	6470917	LOC_Os11g10250
Inversion	Chr11	5566656	6232581	LOC_Os11g10250
Inversion	Chr11	6233761	6423248	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1772394	Chr1	8218444
Translocation	Chr12	2992491	Chr1	8218131	LOC_Os12g06270

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