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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5906184	G-A	HET	UTR_5_PRIME
SBS	Chr1	34284916	C-T	HET	INTERGENIC
SBS	Chr1	40737317	G-T	HOMO	INTERGENIC
SBS	Chr2	11144247	G-A	HOMO	INTRON
SBS	Chr2	30858489	C-T	HET	INTERGENIC
SBS	Chr3	2530312	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g05210
SBS	Chr3	2737460	C-A	HET	INTERGENIC
SBS	Chr3	19677465	C-A	HET	INTERGENIC
SBS	Chr3	26301883	G-T	HOMO	INTERGENIC
SBS	Chr3	26301884	C-T	HOMO	INTERGENIC
SBS	Chr3	31198028	A-T	HET	START_LOST	LOC_Os03g54880
SBS	Chr4	12791442	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g22590
SBS	Chr4	29740116	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g49880
SBS	Chr5	15008004	C-T	HET	INTERGENIC
SBS	Chr5	17022420	T-A	HET	INTERGENIC
SBS	Chr5	17350140	G-A	HET	INTERGENIC
SBS	Chr5	22217573	T-C	HOMO	INTRON
SBS	Chr6	5178896	G-C	HET	INTERGENIC
SBS	Chr6	5459841	C-G	HET	INTERGENIC
SBS	Chr6	9904842	G-A	HET	INTRON
SBS	Chr6	17464669	G-A	HET	INTERGENIC
SBS	Chr7	843760	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g02450
SBS	Chr7	18367356	G-A	HOMO	INTERGENIC
SBS	Chr8	7267425	C-T	HOMO	INTERGENIC
SBS	Chr8	10692829	G-A	HOMO	INTRON
SBS	Chr8	14215141	G-A	HET	INTRON
SBS	Chr8	15708588	G-A	HOMO	INTERGENIC
SBS	Chr9	461048	G-A	HOMO	INTERGENIC
SBS	Chr9	721378	G-A	HET	INTERGENIC
SBS	Chr10	12243697	C-T	HOMO	INTERGENIC
SBS	Chr11	14666749	C-T	HOMO	INTRON
SBS	Chr11	25202320	C-T	HOMO	INTRON
SBS	Chr12	3550366	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g07220
SBS	Chr12	10119252	G-C	HET	INTERGENIC
SBS	Chr12	10998032	C-T	HOMO	INTERGENIC
SBS	Chr12	12255365	G-C	HOMO	INTRON
SBS	Chr12	23544543	C-A	HOMO	INTERGENIC
SBS	Chr12	25328360	T-C	HOMO	INTRON

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	4669914	4669919	5
Deletion	Chr5	5207922	5207924	2
Deletion	Chr1	5576446	5576450	4
Deletion	Chr10	5594132	5594133	1	LOC_Os10g10180
Deletion	Chr4	7418764	7418769	5	LOC_Os04g13350
Deletion	Chr8	8608292	8608293	1
Deletion	Chr4	8821122	8821129	7
Deletion	Chr1	9495001	9509000	14000	2
Deletion	Chr6	10469935	10469947	12	LOC_Os06g18000
Deletion	Chr9	11677467	11677471	4
Deletion	Chr10	12457409	12457443	34
Deletion	Chr11	12580654	12583187	2533	2
Deletion	Chr12	13765436	13765994	558
Deletion	Chr3	17230349	17230489	140
Deletion	Chr7	17874661	17874672	11	LOC_Os07g30240
Deletion	Chr2	18598981	18599496	515
Deletion	Chr7	18923667	18985895	62228	6
Deletion	Chr6	19658166	19658177	11
Deletion	Chr12	23885066	23885067	1
Deletion	Chr7	29580526	29585040	4514	2
Deletion	Chr2	29690408	29690416	8	LOC_Os02g48500
Deletion	Chr4	30085039	30085044	5
Deletion	Chr2	31226408	31226409	1
Deletion	Chr1	36661376	36661378	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	7909927	7909928	2
Insertion	Chr3	25922648	25922649	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8047527	8186862	LOC_Os03g14800
Inversion	Chr3	31172315	31196127

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	13765988	Chr10	14687397	2
Translocation	Chr8	28326732	Chr6	27323140

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr8	26016556	26017943	1387

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