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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34127684	T-A	HET	INTERGENIC
SBS	Chr10	20049800	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr11	21619496	C-T	HET	INTRON
SBS	Chr12	16389943	G-A	HET	INTERGENIC
SBS	Chr12	22412941	C-A	HET	INTERGENIC
SBS	Chr12	2479773	G-A	HET	INTERGENIC
SBS	Chr12	6715776	C-T	HET	INTRON
SBS	Chr2	19575897	T-C	HET	INTERGENIC
SBS	Chr2	32964951	G-T	HOMO	INTERGENIC
SBS	Chr2	9576488	A-C	HOMO	INTERGENIC
SBS	Chr2	9576493	A-G	HOMO	INTERGENIC
SBS	Chr3	17759151	G-A	HOMO	INTRON
SBS	Chr3	6032731	T-C	HOMO	INTERGENIC
SBS	Chr4	22327679	C-T	HET	INTERGENIC
SBS	Chr4	24332230	T-G	HOMO	UTR_3_PRIME
SBS	Chr4	33419270	A-T	HET	UTR_5_PRIME
SBS	Chr4	33419271	C-T	HET	UTR_5_PRIME
SBS	Chr4	5576294	G-C	HOMO	INTERGENIC
SBS	Chr4	5775169	C-T	HOMO	INTERGENIC
SBS	Chr5	11437976	C-T	HOMO	SPLICE_SITE_REGION
SBS	Chr5	3062340	G-C	HOMO	INTERGENIC
SBS	Chr5	4756257	T-C	HOMO	INTERGENIC
SBS	Chr5	4847975	G-A	HOMO	INTERGENIC
SBS	Chr6	10202955	G-C	HET	INTERGENIC
SBS	Chr6	14172121	C-T	HET	INTERGENIC
SBS	Chr6	29622658	T-A	HET	INTERGENIC
SBS	Chr7	13299789	G-A	HOMO	INTRON
SBS	Chr7	22249814	T-C	HET	INTRON
SBS	Chr7	30655	C-T	HOMO	INTERGENIC
SBS	Chr8	17785595	A-T	HOMO	INTERGENIC
SBS	Chr8	6840975	C-T	HET	INTERGENIC
SBS	Chr9	21492108	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g37230
SBS	Chr9	22777096	T-G	HET	INTRON
SBS	Chr9	9564160	A-C	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	3379016	3379018	2
Deletion	Chr5	4756782	4756795	13	LOC_Os05g08694
Deletion	Chr7	5039562	5039572	10
Deletion	Chr1	6209865	6209878	13
Deletion	Chr2	7458998	7459009	11
Deletion	Chr1	7536993	7536996	3
Deletion	Chr2	10608588	10608591	3
Deletion	Chr6	10640867	10640874	7
Deletion	Chr4	10657755	10657760	5
Deletion	Chr5	14456613	14456614	1
Deletion	Chr7	14893339	14893343	4
Deletion	Chr4	18310035	18310039	4
Deletion	Chr8	18818001	18939000	121000	14
Deletion	Chr7	19054819	19054827	8	LOC_Os07g32040
Deletion	Chr9	21335168	21335169	1
Deletion	Chr1	21778654	21778658	4
Deletion	Chr5	21785637	21785638	1
Deletion	Chr7	23236198	23236199	1
Deletion	Chr3	24118997	24119005	8
Deletion	Chr12	25954753	26049716	94963	15
Deletion	Chr2	29150882	29150887	5
Deletion	Chr2	32881422	32881432	10
Deletion	Chr4	33194943	33195137	194	LOC_Os04g55760
Deletion	Chr1	34301383	34301384	1
Deletion	Chr1	37291671	37291680	9
Deletion	Chr1	40394738	40394740	2
Deletion	Chr1	42420191	42420192	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	36532502	36532506	5
Insertion	Chr1	4807434	4807435	2
Insertion	Chr11	22202276	22202277	2
Insertion	Chr12	9349145	9349146	2
Insertion	Chr5	11425184	11425184	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	9440879	10424398	LOC_Os06g17930
Inversion	Chr9	16541470	16965928
Inversion	Chr8	18792991	18818276
Inversion	Chr8	18793014	18939213	LOC_Os08g30710
Inversion	Chr11	21217924	21306716

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	21217938	Chr1	30826407
Translocation	Chr12	24472525	Chr4	33194945	LOC_Os04g55760

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