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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17805603	C-T	HET	INTERGENIC
SBS	Chr1	28552885	G-A	HOMO	INTRON
SBS	Chr11	1295854	T-C	HET	INTERGENIC
SBS	Chr11	15492381	G-A	HOMO	INTERGENIC
SBS	Chr11	16083425	A-C	HET	INTRON
SBS	Chr11	23758251	C-T	HET	INTERGENIC
SBS	Chr11	28167369	G-A	HOMO	INTERGENIC
SBS	Chr11	3593704	G-A	HET	INTERGENIC
SBS	Chr11	6487151	G-A	HET	INTERGENIC
SBS	Chr12	25761167	T-C	HET	INTERGENIC
SBS	Chr12	3600205	A-T	HET	INTERGENIC
SBS	Chr2	23402767	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g38710
SBS	Chr2	8278598	T-G	HOMO	INTERGENIC
SBS	Chr3	28311094	C-T	HOMO	INTRON
SBS	Chr3	30491155	A-G	HET	INTERGENIC
SBS	Chr3	4751033	G-C	HET	INTERGENIC
SBS	Chr3	5646562	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g10990
SBS	Chr3	5646563	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g10990
SBS	Chr5	10454363	G-A	HET	INTERGENIC
SBS	Chr5	27158372	C-T	HET	INTERGENIC
SBS	Chr5	5525238	T-A	HET	INTRON
SBS	Chr6	10109689	C-G	HET	INTERGENIC
SBS	Chr6	10434498	G-A	HET	INTERGENIC
SBS	Chr6	12358815	T-A	HET	INTERGENIC
SBS	Chr6	14597789	T-G	HET	INTERGENIC
SBS	Chr6	25949694	A-T	HET	INTERGENIC
SBS	Chr6	26629722	C-A	HOMO	INTERGENIC
SBS	Chr6	30871602	G-A	HET	INTRON
SBS	Chr6	5715850	A-T	HET	INTERGENIC
SBS	Chr6	7692555	T-C	HET	INTERGENIC
SBS	Chr6	8644756	C-T	HET	INTERGENIC
SBS	Chr7	21969682	A-T	HOMO	INTERGENIC
SBS	Chr7	25506878	T-A	HOMO	INTERGENIC
SBS	Chr8	12036049	G-A	HET	INTRON
SBS	Chr8	24054166	T-G	HOMO	INTERGENIC
SBS	Chr8	26132043	A-T	HET	INTERGENIC
SBS	Chr8	27211341	T-G	HET	INTRON
SBS	Chr8	3627290	G-A	HOMO	INTERGENIC
SBS	Chr8	7067714	C-T	HOMO	INTRON
SBS	Chr9	11886350	G-A	HET	INTERGENIC
SBS	Chr9	21734944	T-A	HET	INTERGENIC
SBS	Chr9	2992485	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g06360
SBS	Chr9	4790739	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09000

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	470292	470295	3
Deletion	Chr8	2138521	2138532	11
Deletion	Chr7	3339069	3339070	1
Deletion	Chr8	3873461	3873462	1
Deletion	Chr9	6433840	6433841	1
Deletion	Chr7	15516103	15516104	1
Deletion	Chr2	16489642	16489645	3	LOC_Os02g27850
Deletion	Chr1	17336571	17343070	6499	2
Deletion	Chr8	18005429	18005492	63
Deletion	Chr8	18146082	18174677	28595	4
Deletion	Chr9	18678373	18678376	3
Deletion	Chr9	19252312	19252317	5
Deletion	Chr11	20617861	20617862	1
Deletion	Chr3	21639773	21660385	20612	2
Deletion	Chr4	24481474	24481482	8	LOC_Os04g41260
Deletion	Chr8	25702301	25702307	6
Deletion	Chr6	26711992	26711993	1
Deletion	Chr5	29621648	29621654	6
Deletion	Chr1	32495216	32495224	8

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	544757	544757	1
Insertion	Chr2	1838114	1838114	1
Insertion	Chr8	16622730	16622731	2

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	19861967	Chr7	7093236	2

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