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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16114367	A-G	HET	INTRON
SBS	Chr1	35590305	C-A	HET	INTERGENIC
SBS	Chr1	37607436	G-A	HET	INTERGENIC
SBS	Chr1	39566587	A-T	HET	INTRON
SBS	Chr1	39566588	C-T	HET	INTRON
SBS	Chr10	1829025	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g04000
SBS	Chr10	20074557	A-T	HET	INTERGENIC
SBS	Chr11	11953435	C-A	HOMO	INTERGENIC
SBS	Chr12	22337516	C-T	HOMO	INTERGENIC
SBS	Chr12	7338211	G-A	HOMO	INTERGENIC
SBS	Chr2	6461007	A-G	HOMO	INTERGENIC
SBS	Chr3	23110605	C-T	HET	INTERGENIC
SBS	Chr3	31268966	C-A	HET	INTERGENIC
SBS	Chr3	7020457	G-T	HET	INTERGENIC
SBS	Chr3	9783854	T-C	HET	UTR_3_PRIME
SBS	Chr4	10578278	G-T	HET	INTERGENIC
SBS	Chr4	14866590	A-G	HOMO	INTERGENIC
SBS	Chr4	20690399	C-A	HET	INTERGENIC
SBS	Chr4	21086097	G-T	HET	INTERGENIC
SBS	Chr4	3002231	G-C	HOMO	INTRON
SBS	Chr4	6607788	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	27655856	C-A	HET	INTERGENIC
SBS	Chr5	2972347	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	8957769	A-T	HET	INTRON
SBS	Chr6	22435824	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	7887937	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g14140
SBS	Chr7	20923497	C-T	HOMO	INTERGENIC
SBS	Chr7	23620997	T-A	HET	INTRON
SBS	Chr8	25731177	G-C	HOMO	INTRON
SBS	Chr9	8540384	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14450
SBS	Chr9	8540427	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14450

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2753727	2753732	5
Deletion	Chr9	3276531	4309696	1033165	144
Deletion	Chr8	6068967	6068971	4
Deletion	Chr4	8150610	8150621	11
Deletion	Chr4	10510880	10510901	21
Deletion	Chr8	10661025	10661028	3
Deletion	Chr10	10921001	11305000	384000	51
Deletion	Chr3	11870074	11870077	3	LOC_Os03g20920
Deletion	Chr10	12248973	12248983	10
Deletion	Chr7	12618051	12618052	1
Deletion	Chr12	18131127	18131142	15
Deletion	Chr1	18209182	18209183	1
Deletion	Chr10	19434569	19434576	7
Deletion	Chr12	19688672	19688682	10
Deletion	Chr8	20351300	20351303	3	LOC_Os08g32840
Deletion	Chr4	22940251	22940258	7
Deletion	Chr5	24986285	24986309	24
Deletion	Chr1	25109832	25109835	3	LOC_Os01g43820
Deletion	Chr5	29083340	29083343	3
Deletion	Chr2	30384292	30384310	18

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	18973290	18973290	1
Insertion	Chr1	43134513	43134518	6
Insertion	Chr11	4803269	4803270	2
Insertion	Chr3	11330959	11330959	1
Insertion	Chr5	16375533	16375534	2
Insertion	Chr6	24589600	24589603	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	1932112	4309689
Inversion	Chr10	10540921	10602102	LOC_Os10g20940
Inversion	Chr10	10602109	10779610	LOC_Os10g20940

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	18590209	Chr4	29015520	LOC_Os04g48670

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