Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25393050	T-G	HOMO	INTERGENIC
SBS	Chr1	33304468	G-A	HOMO	UTR_3_PRIME
SBS	Chr1	33477006	T-C	HOMO	INTRON
SBS	Chr1	33477007	T-C	HOMO	INTRON
SBS	Chr11	22246155	C-T	HET	INTERGENIC
SBS	Chr11	26299122	A-T	HOMO	INTERGENIC
SBS	Chr11	26299124	A-T	HOMO	INTERGENIC
SBS	Chr12	10992719	C-T	HET	INTERGENIC
SBS	Chr12	10992721	T-A	HET	INTERGENIC
SBS	Chr12	13919855	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g24400
SBS	Chr12	14620290	G-A	HET	INTERGENIC
SBS	Chr12	20117080	A-T	HOMO	INTERGENIC
SBS	Chr2	29727250	A-T	HET	UTR_5_PRIME
SBS	Chr2	4804201	G-A	HOMO	STOP_GAINED	LOC_Os02g09340
SBS	Chr3	10444479	T-A	HET	INTRON
SBS	Chr3	25087679	C-T	HET	INTERGENIC
SBS	Chr4	16522031	C-A	HOMO	INTERGENIC
SBS	Chr4	20091669	C-G	HET	UTR_5_PRIME
SBS	Chr4	25431633	T-A	HET	INTERGENIC
SBS	Chr4	7085989	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g12830
SBS	Chr4	8913156	C-G	HOMO	INTRON
SBS	Chr5	13610331	C-T	HOMO	INTERGENIC
SBS	Chr6	11052200	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	24528630	G-C	HOMO	INTERGENIC
SBS	Chr7	27736488	T-C	HOMO	INTRON
SBS	Chr8	9713454	A-G	HET	INTERGENIC
SBS	Chr9	6922213	C-T	HOMO	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	810668	810678	10
Deletion	Chr7	1023561	1023566	5
Deletion	Chr1	1566028	1566035	7	LOC_Os01g03740
Deletion	Chr8	5642081	5642091	10	LOC_Os08g09760
Deletion	Chr7	7051152	7051153	1
Deletion	Chr8	8467754	8467755	1
Deletion	Chr8	8576132	8576136	4
Deletion	Chr8	11686783	11686790	7
Deletion	Chr6	12686729	12701294	14565	3
Deletion	Chr12	12731859	12731869	10
Deletion	Chr1	13470001	13797000	327000	49
Deletion	Chr9	13640094	13640121	27	LOC_Os09g23084
Deletion	Chr1	13966129	13973887	7758	LOC_Os01g24800
Deletion	Chr1	15227729	15228061	332
Deletion	Chr6	15826529	15826532	3
Deletion	Chr12	16242119	16242129	10
Deletion	Chr8	20452783	20453866	1083
Deletion	Chr4	21467139	21467140	1
Deletion	Chr11	24396379	24396383	4
Deletion	Chr7	25491761	25491762	1
Deletion	Chr8	25870001	25921000	51000	8
Deletion	Chr2	26686457	26686459	2	LOC_Os02g44124
Deletion	Chr5	29335794	29335799	5
Deletion	Chr2	31659280	31659281	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	23490639	23490640	2
Insertion	Chr3	12758516	12758516	1
Insertion	Chr3	26793566	26793566	1
Insertion	Chr4	21130579	21130580	2
Insertion	Chr7	24313236	24313237	2
Insertion	Chr9	16220472	16220474	3

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	25612373	25869855	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3667473	Chr2	2071987	LOC_Os02g04630
Translocation	Chr11	9861070	Chr10	15558015

Main menu