Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11559019	C-G	HOMO	INTERGENIC
SBS	Chr1	17085280	C-A	HOMO	INTRON
SBS	Chr1	22146113	A-G	HET	INTERGENIC
SBS	Chr1	28884035	T-C	HET	INTERGENIC
SBS	Chr1	8211371	C-T	HOMO	INTERGENIC
SBS	Chr10	12604490	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24560
SBS	Chr10	21486934	C-T	HOMO	UTR_3_PRIME
SBS	Chr10	3594034	A-G	HET	INTERGENIC
SBS	Chr10	4015204	T-G	HET	SYNONYMOUS_CODING
SBS	Chr10	8269861	G-T	HET	INTERGENIC
SBS	Chr10	944452	T-C	HET	INTERGENIC
SBS	Chr11	26670244	G-C	HET	INTERGENIC
SBS	Chr11	3502021	C-T	HOMO	INTERGENIC
SBS	Chr12	22716223	A-G	HET	INTERGENIC
SBS	Chr12	23151762	T-C	HET	INTRON
SBS	Chr2	13762514	T-C	HOMO	INTRON
SBS	Chr2	21587693	A-G	HET	INTERGENIC
SBS	Chr3	28083227	G-C	HET	INTERGENIC
SBS	Chr4	14742644	C-A	HET	UTR_3_PRIME
SBS	Chr4	1784365	C-T	HOMO	INTERGENIC
SBS	Chr4	22922346	C-T	HET	INTERGENIC
SBS	Chr4	35162387	T-C	HET	INTERGENIC
SBS	Chr5	24587828	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	5357670	A-T	HET	INTERGENIC
SBS	Chr6	16879651	T-A	HET	UTR_3_PRIME
SBS	Chr6	16879652	C-A	HET	UTR_3_PRIME
SBS	Chr6	2033709	G-T	HET	INTRON
SBS	Chr6	994243	T-C	HOMO	INTERGENIC
SBS	Chr7	13625539	A-T	HET	INTERGENIC
SBS	Chr7	4528240	G-A	HET	INTERGENIC
SBS	Chr8	27259393	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g43110
SBS	Chr8	27259394	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g43110
SBS	Chr9	6410167	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11490

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	819001	851000	32000	8
Deletion	Chr6	994136	994199	63
Deletion	Chr6	1494278	1494287	9	LOC_Os06g03770
Deletion	Chr6	1639512	1639513	1
Deletion	Chr10	2815406	2815408	2
Deletion	Chr11	3177607	3177613	6
Deletion	Chr2	8212420	8212429	9
Deletion	Chr1	8559639	8559642	3
Deletion	Chr11	9678919	9678922	3
Deletion	Chr4	13089479	13089485	6
Deletion	Chr3	14257134	14257139	5
Deletion	Chr6	14785155	14785156	1
Deletion	Chr8	15179329	15179330	1
Deletion	Chr3	16066112	16066118	6	LOC_Os03g27970
Deletion	Chr5	16828624	16828633	9
Deletion	Chr2	19230780	19230781	1
Deletion	Chr5	19303553	19303567	14
Deletion	Chr11	20654038	20654043	5	LOC_Os11g35220
Deletion	Chr7	24243876	24243895	19
Deletion	Chr12	25218485	25218491	6
Deletion	Chr7	26216420	26216421	1
Deletion	Chr8	26252862	26252871	9

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2329880	2329881	2
Insertion	Chr10	2478261	2478262	2
Insertion	Chr11	18804838	18804841	4
Insertion	Chr5	7365322	7365323	2
Insertion	Chr8	23712031	23712031	1
Insertion	Chr9	5631038	5631039	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3768392	5372978	LOC_Os08g06720
Inversion	Chr8	5078171	5359726	LOC_Os08g09230

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	17329317	Chr11	27735911	LOC_Os11g45840
Translocation	Chr12	17329320	Chr2	27027149	LOC_Os02g44599

Main menu